Updated compatibility with upcoming changes to
loo_compare() output structure in the loo
package (> 2.9.0), which now returns a data frame instead of a matrix
and includes additional diagnostic columns.
ubms 1.2.8
Add probs argument to summary method
Fix deprecated arma::is_finite warnings from CRAN
Minor bugfixes
ubms 1.2.7
Package links now go to biodiverse Github org
Use reformulas instead of lme4
Return eta from ranef when submodel has spatial component
Support terra format rasters in predict
Minor bugfixes
ubms 1.2.6
Fix deprecated Stan code
ubms 1.2.5
Fix issue with version number not being a string
Adding missing roxygen tag
ubms 1.2.4
Adjust Makevars to fix problems with clang 16
ubms 1.2.3
Fix bug in Stan code revealed by new StanHeaders
Drop C++ specification per CRAN instructions
Remove deprecated ggplot2 functions
Small updates to overview vignette
ubms 1.2.2
Fix broken URLs in vignettes
New kfold function
Add ability to not save log likelihoods in posterior
Add new Laplace prior (thanks Justin Cally)
Better handling of factors with levels that don’t appear in
data
Fix CRAN clang warnings
Misc. bugfixes
ubms 1.1.0
Support for restricted spatial regression (RSR)
Add vignette for RSR
Update default priors and allow setting custom priors
Support for offsets
New utility functions and bugfixes
ubms 1.0.2
Make default priors less informative
Fix issues in sim_z C++ code that triggered clang-UBSAN
errors
Fix various minor issues with checks/tests on R-oldrel
ubms 1.0.1
Added vignette comparing ubms and JAGS output
Added configuration for pkgdown site
Small adjustments to wording in DESCRIPTION and docs for CRAN
submission
ubms 0.1.9
Add time-to-detection occupancy model
(stan_occuTTD)
Wrote examples for all fitting functions
Many new tests added
Wrote a vignette demonstrating random effects
ubms 0.1.8
Added distance-sampling model (stan_distsamp)
Added multinomial-Poisson mixture model
(stan_multinomPois)
Wrote overview vignette
ubms 0.1.4
Added dynamic occupancy model (stan_colext)
Consolidated single-season models into one Stan file to speed up
compilation