tidytree: A Tidy Tool for Phylogenetic Tree Data Manipulation
Phylogenetic trees contain components such as nodes, edges,
branches, and associated data. As the core data manipulation tool in the
'ggtree' ecosystem, 'tidytree' provides tools for converting tree objects
to tidy data frames and tidy interfaces for manipulating, analyzing, and
visualizing tree data.
| Version: |
0.4.8 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
ape, dplyr, lazyeval, magrittr, methods, rlang, tibble, tidyr, tidyselect, yulab.utils (≥ 0.1.5), pillar, cli |
| Suggests: |
testthat, utils |
| Published: |
2026-07-02 |
| DOI: |
10.32614/CRAN.package.tidytree |
| Author: |
Guangchuang Yu 
[aut, cre, cph],
Bradley Jones [ctb],
Zebulun Arendsee [ctb] |
| Maintainer: |
Guangchuang Yu <guangchuangyu at gmail.com> |
| BugReports: |
https://github.com/YuLab-SMU/tidytree/issues |
| License: |
Artistic-2.0 |
| URL: |
https://yulab-smu.top/contribution-tree-data/ |
| NeedsCompilation: |
no |
| Citation: |
tidytree citation info |
| Materials: |
NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
tidytree results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse imports: |
avotrex, crumblr, FossilSim, ggtree, ggtreeDendro, ggtreeExtra, iNEXT.3D, iNEXT.beta3D, miaViz, MicrobiotaProcess, oppr, RevGadgets, RPesto, rtrees, sitePath, treeio |
| Reverse suggests: |
compcodeR, DAISIE, deeptime, delimtools, nosoi, pctax, tripaccess |
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