High-Performance Open-Source Archive
Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
| Version: | 0.11.1 |
| Depends: | R (≥ 3.0.0) |
| Imports: | RSQLite, R.utils, data.table, curl (≥ 5.0.0) |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2025-03-13 |
| DOI: | 10.32614/CRAN.package.taxonomizr |
| Author: | Scott Sherrill-Mix [aut, cre] |
| Maintainer: | Scott Sherrill-Mix <ssm at msu.edu> |
| BugReports: | https://github.com/sherrillmix/taxonomizr/issues |
| License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://github.com/sherrillmix/taxonomizr/ |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | taxonomizr results |
| Reference manual: | taxonomizr.html , taxonomizr.pdf |
| Vignettes: |
taxonomizr usage (source, R code) |
| Package source: | taxonomizr_0.11.1.tar.gz |
| Windows binaries: | r-devel: taxonomizr_0.11.1.zip, r-release: taxonomizr_0.11.1.zip, r-oldrel: taxonomizr_0.11.1.zip |
| macOS binaries: | r-release (arm64): taxonomizr_0.11.1.tgz, r-oldrel (arm64): taxonomizr_0.11.1.tgz, r-release (x86_64): taxonomizr_0.11.1.tgz, r-oldrel (x86_64): taxonomizr_0.11.1.tgz |
| Old sources: | taxonomizr archive |
| Reverse imports: | DBTC, MetaScope |
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