Support for LongVectors for graphs with more than 2 ^
31 edges.
Test for full weighted graph.
Changed
Update libSE2 to 0.1.13 (improves performance and error handling)
and subsequently igraph to 1.0.0
Write C constructors to directly convert R SEXP types to SE2 types
without having to go through igraph data type as an intermediate.
Especially in weighted full graphs, this reduces memory requirements by
a scalar factor and reduces the time it takes to perform the
conversion.
Fixed
In cluster_genes fix directedness of a symmetric
correlation matrix.
Printing in C files. Previously was adding extra linebreaks.
speakeasyR 0.1.7
Changed
Update libSE2 to 0.1.11. Fixes issue with subclustering.
speakeasyR 0.1.6
Changed
Update libSE2 to 0.1.10. Performance improvements.
speakeasyR 0.1.5
Changed
Update libSE2 to 0.1.9. Improves performance on graphs with skewed
weight distributions.
Fixed
Remove bashism in configure.ac
speakeasyR 0.1.4
Add
A high level function for clustering genes based on gene
expression.
Changed
Update libSE2 to 0.1.8.
Fixed
Replace deprecated use of CHARACTER*len in arpack.
speakeasyR 0.1.3
Add
Ability to interrupt speakeasy 2.
Release built tarball for manual installation.
Add explicit test for reproducible results.
Changed
Update SE2 C library providing performance improvements.
Tests to be based on quality of clustering instead of exact match to
previous run. Since SE2 is stochastic, tweaking the underlying algorithm
can change the resulting membership vector even when using a random
seed. Even if the membership vector is not identical it should be
similar based on normalized mutual information.
Fixed
Clean up generated module files when compiling using intel’s fortran
compiler.
speakeasyR 0.1.2
Add
Contributors of vendored software to DESCRIPTION.
Support for external ARPACK
Changed
Use autoconf to generate configure file in order to detect system
packages and support for pthreads.
Remove support for compiling internal linear algebra packages and no
longer ship source code for those packages.
Fixed
Prevent unused igraph vendored packages from being shipped in the
source tarball.
Update SE2 C library to fix address sanitizer errors.
speakeasyR 0.1.1
Fixed
Guard against missing suggested packages in vignettes, tests, and
examples.