seqmagick: Sequence Manipulation Utilities
Tools for reading and writing biological sequences in multiple
formats, including 'FASTA', 'PHYLIP', 'CLUSTAL', 'STOCKHOLM', 'MEGA' and
'GenBank'. Supports interleaved and sequential layouts where applicable,
converts between formats, and manipulates sequence sets (e.g., filtering by
patterns and computing consensus sequences from alignments). Also includes
functions to download nucleotide records from NCBI by accession.
| Version: |
0.1.8 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.6) |
| Suggests: |
knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc |
| Published: |
2026-01-31 |
| DOI: |
10.32614/CRAN.package.seqmagick |
| Author: |
Guangchuang Yu 
[aut, cre] |
| Maintainer: |
Guangchuang Yu <guangchuangyu at gmail.com> |
| BugReports: |
https://github.com/YuLab-SMU/seqmagick/issues |
| License: |
Artistic-2.0 |
| URL: |
https://github.com/YuLab-SMU/seqmagick |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
seqmagick results |
Documentation:
Downloads:
Reverse dependencies:
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