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CRAN: Package seqinr

seqinr: Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.

Version: 4.2-44
Depends: R (≥ 2.10.0)
Imports: ade4, segmented
Published: 2026-04-28
DOI: 10.32614/CRAN.package.seqinr
Author: Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel at univ-lyon1.fr>
BugReports: https://github.com/lbbe-software/seqinr/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/lbbe-software/seqinr
NeedsCompilation: yes
SystemRequirements: zlib headers and library.
Citation: seqinr citation info
Materials: NEWS
In views: Omics
CRAN checks: seqinr results

Documentation:

Reference manual: seqinr.html , seqinr.pdf

Downloads:

Package source: seqinr_4.2-44.tar.gz
Windows binaries: r-devel: seqinr_4.2-44.zip, r-release: seqinr_4.2-44.zip, r-oldrel: seqinr_4.2-44.zip
macOS binaries: r-release (arm64): seqinr_4.2-44.tgz, r-oldrel (arm64): seqinr_4.2-44.tgz, r-release (x86_64): seqinr_4.2-44.tgz, r-oldrel (x86_64): seqinr_4.2-44.tgz
Old sources: seqinr archive

Reverse dependencies:

Reverse depends: Autoplotprotein, EnsCat, GeneGA, LSPFP, MethTargetedNGS, plotprotein, rnaCrosslinkOO, sangeranalyseR, SMM, specL
Reverse imports: AbSolution, adegenet, agvgd, alakazam, AllelicImbalance, AmyloGram, AnnotationBustR, AntibodyForests, appreci8R, artMS, beautier, BioVizSeq, CellBarcode, circRNAprofiler, ClassifyITS, cleanUpdTSeq, copyseparator, CovidMutations, CRISPRseek, debar, drimmR, EnvNJ, EpiSemble, GB5mcPred, GenomicSig, gkmSVM, gquad, HextractoR, IMMAN, inDAGO, insect, IntEREst, itol.toolkit, LncFinder, longreadvqs, MAGNAMWAR, metaCluster, metacoder, methylscaper, MSA2dist, netmhc2pan, OpEnCAST, OpEnHiMR, openPrimeR, orthGS, PICB, PMScanR, postNet, prozor, PTXQC, RHybridFinder, seq2R, shazam, shinyWGD, signalHsmm, sitePath, smmR, sscu, surfaltr, SynMut, TmCalculator, trace, vhcub, vivaldi, wavClusteR
Reverse suggests: biomartr, ChIPpeakAnno, cubfits, dartR, dartR.base, file2meco, idpr, lncRna, midasHLA, MiRaGE, MiscMetabar, msa, phangorn, ProteoDisco, RScelestial, rtemis, rtemis.a3, tidysq, vhica
Reverse enhances: spgs

Linking:

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