High-Performance Open-Source Archive
An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
| Version: | 0.8.5 |
| Depends: | R (≥ 3.4.0), ape (≥ 3.3), phylolm (≥ 2.4), ggplot2 (≥ 2.1.0) |
| Imports: | caper (≥ 0.5.2), phytools (≥ 0.6), geiger (≥ 2.0) |
| Suggests: | knitr, rmarkdown |
| Published: | 2020-04-02 |
| DOI: | 10.32614/CRAN.package.sensiPhy |
| Author: | Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut], Pablo Martinez [ctb] |
| Maintainer: | Gustavo Paterno <paternogbc at gmail.com> |
| BugReports: | https://github.com/paternogbc/sensiPhy/issues |
| License: | GPL-2 |
| URL: | https://github.com/paternogbc/sensiPhy |
| NeedsCompilation: | no |
| Citation: | sensiPhy citation info |
| Materials: | NEWS |
| CRAN checks: | sensiPhy results |
| Reference manual: | sensiPhy.html , sensiPhy.pdf |
| Vignettes: |
sensiPhy: R-package for sensitivity analysis in phylogenetic comparative methods (source, R code) |
| Package source: | sensiPhy_0.8.5.tar.gz |
| Windows binaries: | r-devel: sensiPhy_0.8.5.zip, r-release: sensiPhy_0.8.5.zip, r-oldrel: sensiPhy_0.8.5.zip |
| macOS binaries: | r-release (arm64): sensiPhy_0.8.5.tgz, r-oldrel (arm64): sensiPhy_0.8.5.tgz, r-release (x86_64): sensiPhy_0.8.5.tgz, r-oldrel (x86_64): sensiPhy_0.8.5.tgz |
| Old sources: | sensiPhy archive |
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