High-Performance Open-Source Archive
joss_article() now correctly works as
base_format for bookdown::pdf_book() (thanks,
@mlysy, #564).
oup_article() now supports also
acknowledgments in addition to
acknowledgements as the original OUP LaTeX template
(thanks, @dmkaplan2000, #563).
Update resources for copernicus_article() to version
7.8 from 18 March 2024 (@RLumSK) and fix issue #565 reported by @colinasmith
Update tf_article() template to latest bundle update
from InteractCADLaTeX v1.04 - May 2023.
thanks: true will now show the contact information
will all authors. Use
thanks:
author:
- name: Author 1
email: email 1to add specific authors.
biblio-style is now supported. It is set by defauilt
to tfcad.bst for
T&F standard Chicago author-date style.
sim_article(). This
implies new resources files and new available options in template
(thanks, @henrikibster, #545).elsevier_article() Rmd skeleton is now updated to
show different available bibliostyle file (i.e *.bst for
natbib) with elsearticle document class.
biblio-style: elsarticle-harv is set by default to
correctly work with the authoryear classoption already set
(thanks, @pepijn-devries, #545).
Update ajs_article() resources for the
template.
Update frontiers_article() to version 3.4 from
2022.
natbib citation
processor when Pandoc 3.1.7+ is used, because Frontiers documentclass
requires usage of natbib and it conflicts with pandoc
Citeproc.Update mnras_article() and
lncs_article() to work with the Pandoc 3.1.7+ citeproc
change.
ajs_article() and jss_article() require
Pandoc 2.7+ (possibly required by some changes in
jss.cls).
rjournal_article() is now soft deprecated in favor
of rjtools::rjournal_pdf_article() as
rjtools package is now the recommended workflow at https://rjournal.github.io/submissions.html. A warning
will be thrown when rticles’ function is used.
springer_article() has been updated to new LaTeX
templates and CTAN package (thanks, @eliocamp, #494). we really advice
to start new article from scratch by creating new document using lates
RMakrdown template. Among changes:
.tex templates derived from https://www.springernature.com
using sn-jnl.clsnatbib is now the default
citation processing package used (previous it was pandoc citeproc) and
number_sections is TRUE by default now. Set to
FALSE for unnumbered headers.biblio-style is now ignored
as references styling happens with document class option, so using
classoptions is now required. PACS and
MSC is also ignored in favor of pacs.jel and
pacs.msc.ieee_article() now supports several affiliations per
authors when using the wide: true mode
(thanks, @phamdn,
#500).
Add a helper function string_to_table() for
documentating configuration from a list copy pasted from a
.tex template.
Update to the mdpi_article() format (thanks, @mps9506, #515)
xelatex.Definitions/mdpi folder.Improve elsevier_article() affilliations for authors
by supporting same fields as in official template. This also fix address
with comma not showing (thanks, @gjpstrain, @mps9506, #509).
Update RJournal.sty to latest version to support
number sections (thanks, @zeileis, #517).
Update to the asa_article() format (thanks, @ianmtaylor1 #506,
@jepusto, #507):
natbib to tweak option and
biblio-style using Pandoc’s variables,Adapt some template supporting strikethrough to new Pandoc 3.0+ usage of soul instead of ulem.
Some other minors change to templates to be closer to Pandoc’s own LaTeX template.
Template internal change: lineno CTAN package is now
loaded after amsmath in peerj_article(),
elsevier_article() and mdpi_article() because
of a conflict with last version of lineno (thanks, @bischrob, #513).
Update Copernicus Publications template to version 7.3 from 2023-03-17 (@RLumSK, #508, #514, #519).
lncs_article() template for submissions to Lecture
Notes in Computer Science (thanks, @eliocamp, #445).Remove \usepackage{utf8x} usage by default in
plos_article() TeX template as it conflicts with recent
latex2e. As it is in the official PLS journal template, it
is not removed completely but opt-out by default. Use
with_utf8x pandoc variable in YAML to opt-in again if you
want to deal with the conflict differently (thanks, @Sciurus365,
#496).
Update glossa_article() and path template to opt-out
using microtype to prevent issues. Add it back using
extra_dependencies in YAML with adding a preamble if needed
(thanks, @stefanocoretta, #487).
In elsevier_article(), corresponding author is
correctly marked with a * even if no other footnote are set
on the author.
ams_article() bundles ametsoc.cls now
as ametsoc package is not more available on
CTAN.
Nested code chunk in list are now correctly rendered in
jss_article() (thanks, @nbenn, #476).
Update Copernicus Publications template to version 6.8 from 2022-03-28 (@RLumSK, #478, #479).
Update rjournal_article() template to match current
style file. Package and task view macros use secure links, and the
footer includes the year (@mitchelloharawild)
Updates to Pandoc’s template following recent change with new Pandoc version in relevant templates.
elsarticle.cls to
version 3.3 in elsevier_article(). This is a breaking
change in the format that now requires at least Pandoc
2.10 and uses the latest version of the .cls file,
also provided in elsarticle on CTAN. See the
included template for this format. Also, natbib is now used
y default for citation processing. You can use renv to
manage your project in locked environment of packages (thanks, @robjhyndman,
#467).Update jss_article() template to handle ORCID links
for each author from a new YAML field, and to use updated
jss.cls class file (thanks, @remlapmot, #465).
New informs_article() template for submissions to
INFORMS journals (thanks, @robjhyndman, #460).
New iop_article() template for submissions to IOP
journals (thanks, @robjhyndman, #462).
New isba_article() template for submissions to
Bayesian Analysis journal (thanks, @dmi3kno, #461).
Update Copernicus Publications template to version 6.6 from 2022-01-18 (@RLumSK, #463, #464).
rss_article() now supports more than two authors
using usual YAML list syntax in the new authors field. Old
author and author2 are kept for backward
compatibility, but we advice any user to use the new formats. See update
Rmd skeleton template (thanks, @dmi3kno, #466).
graphicx LaTeX package has been added to
ieee_article() format (thanks, Sachin Hebbar, on
RStudio Community).oup_article() template has been updated to include the
possibility of using the latest OUP authoring template now available on
CTAN. It is still possible to use old .cls file as some
journals still depend on it. oup_version will now control
if the old version (oup_version = 0) or the new version is
to be used (oup_version = 1). For this version,
oup_version = 0 is the default. See
?rticles::oup_article() for links to resources. The bundled
Rmd template has also evolved. Use oup_v0 or
oup_v1 as template name - Easiest way to create the
template still remains using the RStudio IDE.
oup_version = 1 comes with a requirement of Pandoc 2.10
minimum. (thanks, @dmkaplan2000, #431)New trb_article() for annual meeting submissions to
the Transportation Research Board Annual Meeting (thanks, @gregmacfarlane,
#427).
New wellcomeor_article() for Wellcome Open Research
articles (thanks, @arnold-c, #436).
Update Copernicus Publications template to version 6.4 from 2021-08-16 (thanks, @RLumSK, #446).
glossa_article() is incompatible with
microtype CTAN package for now. When TinyTeX is used, it
will be uninstalled before rendering.
All template were updated to include parts required by some Pandoc feature when they are used: highlighting, CSL & citation processing, include before, after and in header, Pandoc’s markdown tables. Checks are now included in CI test so that new template missing these parts are detected.
Fixed an issue with microtype CTAN package in
amq_article() by patching the template until upstream issue
if fixed.
sage_article() now correctly set cite style in
template to use comma to match the Sage Havard style per Journal’s
guideline (thanks, @MalteHueckstaedt, #447).
Add copyrightyear and pubyear variable
in bioinformatics_article() (thanks, @stephenturner, #424).
New jedm_article() for the Journal of Educational
Data Mining template (thanks, @jooyoungseo, #251).
New ajs_article() for Austrian Journal of
Statistics (thanks, @matthias-da, #437).
New glossa_article() for articles of Glossa: a journal of general
linguistics (thanks, @stefanocoretta, #361).
Since rticles 0.15, per requirement with R
Journal, rjournal_article() uses knitr::purl()
to produce a R file with the code from the Rmd file. Last version
eagerly overwrites any existing R file with the same name as the purled
file. From now on, if a .R already exists with the name of
the output, it won’t be overwritten anymore, and not purled file will be
outputted. This prevent issue with users maintaining themselves their
own R file to accompany the article. A warning is issued to remind of
deleting the existing R file is one want to use the purled R file
(thanks, @Enchufa2,
#433).
Update Copernicus Publications template to version 6.3 from 2021-07-08 (thanks, @RLumSK, #432).
All templates have now the $highlighting-macros$
variables required for Pandoc highlighting (#435).
Template for tf_article() gains a
classoption variable (thanks, @statzhero, #434).
Add the fenced div with id #refs in
frontiers_article() skeleton to place the reference section
in the correct expected place (thanks, @graysonwhite, #423).
bioinformatics_article() now separates
manuscript_type (e.g., Applications note, Original article)
and subject_section (e.g. Genome analysis, Phylogenetics)
in template and skeleton (thanks, @stephenturner, #415)
For contributors to this package: Markdown syntax is now used with roxygen2 to document R functions. Refer to formating rules on roxygen2 website
bioinformatics_article() has no more trailing comma
after last author (thanks, @stephenturner, #413).
Fix an issue with elsevier_article() and table
produced by RStudio Visual Editor. The template gains some packages for
allowing grid table in Markdown (thanks, @ccamara, #421)
lipics_article() skeleton now sets option
bookdown.theorem.preamble to FALSE to work with
bookdown::pdf_book() and avoid conflicts in theorem
environment definition. This requires bookdown 0.23 or
higher (#392).
oup_article() template now largely compatible to
that of elsevier_article() (thanks, @dmkaplan2000, #403)
elsevier_article() now supports
biblio-style Pandoc’s variable to set the natbib
bibliography style in YAML header (thanks, @gregmacfarlane, #402).
Fix an issue with rjournal_article(). The
.R file in output is now correctly overwritten on a new
render if it existed from a previous render (thanks, @apreshill,
#394).
Update Copernicus Publications template to comply with editor’s
guidelines following a manuscript bounce back during the typesetting
step. Copernicus does not allow to add any \usepackage
command as they all are included in copernicus.cls for
supported LaTeX packages. This is leading to breaking changes
with existing template - please follow the advice below.
algorithms: true cannot be used anymore and as no more
effect. \usepackage{algorithmic} and
\usepackage{algorithm} has been removed from the template
as the command are already done in copernicus.cls. Please,
make sure algorithms and algorithmcx are
installed.highlight parameter of [rmarkdown::pdf_document()] to
enable or disable syntax highlighting with Pandoc. To comply with the
above guideline by Copernicus, it is disabled by default
(highlight: NULL) to prevent Pandoc adding any more
packages required for its highlighting. Syntax highlighting can be
reactivating by using highlight: "default" in the YAML
header as this can be desirable before submitting for typesetting.
(thanks, @RLumSK,
@nuest, #391).Fix issue with Pandoc’s citation processing by updating all templates with last relevant changes from Pandoc’s default template (thanks, @BlackEdder, @dahrens, #390)
remove warning in joss_article() about
citation_package (thanks, @llrs, #389).
fix an issue with rjournal_article() template to
insert newline in author’s block only if a field exist (thanks, @huizezhang-sherry, #387)
Update Copernicus Publications template to version 6.2 from 2021-01-15 (thanks, @RLumSK, #366).
Add article template pihph_article() for the
Papers in Historical Phonology (PiHPh) (thanks, @stefanocoretta,
#362).
Add article template ims_article() for Institute
of Mathematical Statistics Journals, e.g., Annals of Applied
Statistics (thanks, @auzaheta, #372)
springer_article() now uses the yaml variable
biblio-style to set bibliography style instead of bibstyle. (@eliocamp, #358)
Fixes a bug when rendering arxiv_article() with
recent version of TeX Live by adding \usepackage{lmodern}
to the template. (#thanks, @slemonide, #343)
arxiv_article() now supports
header-includes and biblio-style to use in the
YAML header in order to customize its template. Default bibliography
style is still unsrt if not set as before. (thanks, @eliocamp, #356).
Update jss.cls to version 3.2 (#329).
Options can now be passed to hyperref packages using
header-includes and \PassOptionsToPackage in
the AEA template (thanks, @nurfatimaj, #334)
Update Copernicus Publications template to version 6.1. This is
includes a final fix for the LaTeX problem sanitized with the last
rticles update (thanks, @RLumSK, #331).
Update all templates regarding CSLReference environment following changes in Pandoc’s default template.
Add article template jasa_article() for the
Journal of the Acoustical Society of America (JASA) (thanks,
@stefanocoretta, #364)
Fixes arxiv_article() template when adding graphics
from code chunks (thanks, @Athanasiamo, #332).
Fixes ams_article() template regarding authors
insertion (thanks, @ConorIA, #340).
Update Copernicus Publications template to version 6.0 and
sanitize and issue that caused pdftex from hanging (thanks,
@RLumSK,
#331).
Add CSLReferences environment to support new Pandoc
2.11 citation processing (#335).
Add article template lipics_article() for
Leibniz International Proceedings in Informatics (LIPIcs)
(thanks, @nuest,
#288).
Fixed ctex_article() to correctly use the default
Pandoc template as intended in the PR #307, which introduced the bug
#322 (thanks, @baketbek @cderv #323).
The minimal version of knitr required is 1.30 now.
Added a new journals() function to list all
available journal names in this package (#318).
Template directory in package’s rmarkdown/templates
directory has been renamed from journalname_article to
journalname. To create a new document using
rmarkdown::draft, only the journalname should be
provided, i.e.,
rmarkdown::draft("MyArticle.Rmd", template = "rjournal", package = "rticles")
(#316).
Improved the rjournal_article() format :
.tex, .R, and PDF files with correct names are
generated to match the author’s guidelines, two affiliations is now
supported for authors, the last author is separated by and
when multiple authors are present, and the documentation has been
improved on the help page ?rticles::rjournal_article and in
the skeleton document (thanks, @RLumSK, #286).
Added a author.affiliation2 field in
jss_article() template to provide another affiliation to be
used in the adress field in place of author.affiliation.
This allow differently formatted affiliation for example (thanks, @aldomann, #291).
Improved the jss_article() format: Short titles can
now be provided to headers to escape code/math in section titles, the
continuation prompt has been corrected (from R+ to
+), and the skeleton document has been updated accordingly
(thanks, @statibk
#254, @Freguglia
#294).
Fixed elsevier_article() template so that chunk
option out.width can be set (thanks, @EddieItelman, #300).
Fixed pnas_journal() skeleton to show how correctly
add corresponding_author and equal_author
(thanks, @EddieItelman, #299).
Added article template for journal Bioinformatics (thanks, @ShixiangWang, #297).
Update Copernicus Publications template to version 5.8 (thanks, @nuest, #274).
Fixed issue with multi-line authors on JSS template when using
\AND, which was firstly implemented in
b740b19b90cd6f7afe2cd7d66456c9efa0bb4cdf (thanks, @aldomann, #292).
Added the missing support for header-includes to the
Biometrics template (thanks, @haozhu233, #296).
Added support for George Kour’s arXiv preprint format (thanks, @alexpghayes, #236).
Update to OUP format for knitr::kable table
generation and optionally placing floats at end of document (thanks,
@dmkaplan2000,
#279).
Update to OUP format to use pandoc-citeproc by
default for citations (thanks, @dmkaplan2000, #289).
Deleted the LaTeX template of the rticles::ctex
format. This format will use Pandoc’s built-in template instead, which
works well with the LaTeX package ctex (thanks, @XiangyunHuang,
#307).
Added the output format rticles::ctex_article as an
alias to rticles::ctex, to be consistent with the names of
other *_article formats.
Added custom author ordering for the IEEE template (thanks, @DunLug, #263).
Added a multi-line authoring option in the IEEE template (thanks, @DunLug, #264).
Added the citation_sorting YAML option to change the
biblatex’s sorting option in ieee_article() output (thanks,
@DunLug,
#265).
mnras.cls was removed from this package because it
exists on CTAN.
Added Oxford University Press (OUP) template (thanks, @dmkaplan2000, #271).
Added the cslreferences environment to all templates
(thanks, @bbauzile,
#260).
Updated the template for elsevier_article() to allow
for two authors to share the same footnote (e.g. “these authors made
equal contributions”) and updated the corresponding skeleton to
demonstrate how to use a shared footnote (thanks, @salauer, #255).
Fixed header includes for rjournal_article()
(thanks, @agila5 #257,
@rcannood
#261).
Add support for bibliography styles on the Springer template (thanks, @swhaat, #262).
pnas_article() document class from the PNAS
website https://www.pnas.org/page/authors/latex (#21).Added the Journal of Open Source Software (and Education) template (@noamross, #229).
Tweaked the tf_article template to avoid using
absolute full paths for figures in the “Figures” section (@jooyoungseo,
#246).
peerj_article()
format (@zkamvar,
#238).Added support for Keywords in IEEE Trans template (@espinielli, #227).
Updated Statistics in Medicine template to its latest version (@ellessenne, #231).
Update Copernicus Publications template to version 5.3 (@nuest, #228).
Use csl file for citations in output format
elsevier_article() (@nuest, #233).
Added the Taylor & Francis journal template (@dleutnant, #218).
The top-level option biblio-files in the YAML
frontmatter was changed to bibliography in the
elsevier_article() template (@JohannesFriedrich,
#222).
Added header option correspongdingauthors to
configure multiple corresponding authors for Copernicus Publications
(@nuest,
#221).
Updated the template for MDPI to 02/2019 (@dleutnant, #203).
Added the template for the Frontiers Journals (@muschellij2, @zkamvar, #209).
Added the template for the AGU Journals (thanks, @eliocamp, #199).
Updated the template for PLOS to version 3.5 (thanks, @uvesten, #196).
No longer hardcode the LaTeX engine to xelatex in
rsos_article() (thanks, @bensprung, #198).
Added an argument pandoc_args to
ieee_article() so that users can pass custom Pandoc
arguments. This also makes it work with
bookdown::pdf_book() (thanks, @espinielli, #206).
The base_format argument has been removed from
peerj_article() (#127) and
copernicus_article() (#172). This argument was originally
added mainly for supporting bookdown::pdf_book(), but you
should really pass these formats to the base_format
argument of bookdown::pdf_book instead of the other way
around. See
https://bookdown.org/yihui/rmarkdown/rticles-bookdown.html.
For output formats acm_article(),
acs_article(), ams_article(),
mnras_article(), the csl file should be specified as a
top-level option in the YAML header of the document (this has been done
in the R Markdown templates). It is no longer specified automatically by
the output format functions.
The function ctex_template() was removed. If you
need to use a custom LaTeX template for the ctex output
format, just use the template option under
ctex.
Added the template for the SAGE Journals (thanks, @oguzhanogreden, #181).
Added the template for Biometrics (thanks, @daltonhance, #170).
Added the template for Copernicus Publications journals (thanks, @nuest, #172).
Supports syntax highlighting in the ieee_article()
and acm_article() formats (thanks, @rainer-rq-koelle, #182).
Disabled syntax highlighting for rjournal_article()
(thanks, @eddelbuettel, #185).
Added the template for the IEEE Transaction Journals (thanks, @Emaasit, #97).
Added the PeerJ format (thanks, @zkamvar, #127).
Added a template for the Royal Society Open Science Journal (thanks, @ThierryO, #135).
Added a template for Bulletin de l’AMQ (thanks, @desautm, #145).
Added the MDPI journal template (thanks, @dleutnant, #147).
Added the Springer Journal Article template (thanks, @strakaps, #164).
Added the template for MNRAS (Monthly Notices of the Royal Astronomical Society) articles (thanks, @oleskiewicz, #175).
Fixed #6, #10, #49, #132, and #149: dollar signs and other
special LaTeX characters such as ^ can be used in code
chunks in JSS and R Journal articles now, but Pandoc 2.x will be
required (you can use the Preview version of RStudio if you do not want
to install Pandoc separately).
Fixed #9: special characters such as spaces and underscores can be used in Rmd filenames for R Journal articles now.
Fixed #71: bibliography is supported for The R Journal articles now.
Supports breaking the JSS author list into multiple lines; see #100 for details.
Add Royal Society Open Science journal template
Add Institute of Electrical and Electronics Engineers (IEEE) IEEEtrans template for Conferences
Add American Chemical Society (ACS) template
Allow changing of documentclass and classoption for JSS articles
Support bibliography for JSS articles (#63)
Add tightlist macro to Elsevier skeleton
Add address and footnote examples to Elsevier skeleton
Fix preamble variable name in R Journal template
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