High-Performance Open-Source Archive
impute may not be installed from Bioconductor.cliplot_heatmap]calculate_sample_mahalanobis_distances to
calculate the Mahalanobis distance of samples from the PC centroid
Calico/#85tomi matrix export with
tomic_to_matrix. Calico/#78invert arguments to filter_tomic
Calico/#89get_tomic_table() makes it easy to pull individual
tables out of tomic objects. Calico/#55add_pcs() Calico/#52add_pcs() Calico/#53plot_heatmap() Calico/#60?romic Calico/#63plot_bivariate() supports setting size, alpha, and
shape. Calico/#48add_pc_loadings() changed to add_pcs() for
accuracy. Added fraction of variability explained by PCs to
add_pcs(). Calico/#32plot_univariate() and plot_bivariate()
supporting providing a partial string match to a variable name. This
helps to generate consistent plots even if names might change (like PC1
(10%)). Calico/#44add_pcs(). Calico/#42plot_heatmap() rowlabels are suppressed when there are
too many features rather than setting size to zero. Calico/#45plot_heatmap() supports ordered objects.
Calico/#37coerce_to_classes() added support for glue objects.
Calico/#35
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