High-Performance Open-Source Archive
Reversion mutations are secondary mutations that reverse the deleterious effects of an original pathogenic mutation, partially or fully restoring the gene's function. The revert package detects reversion mutations for a specific pathogenic mutation from DNA-seq bam files.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.4.0) |
| Imports: | BSgenome, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ensembldb, pwalign, stats, utils |
| Suggests: | knitr, rmarkdown, futile.logger, BSgenome.Hsapiens.UCSC.hg19, EnsDb.Hsapiens.v75, BSgenome.Hsapiens.UCSC.hg38, EnsDb.Hsapiens.v86 |
| Published: | 2025-12-17 |
| DOI: | 10.32614/CRAN.package.revert |
| Author: | Hui Xiao [aut, cre], Stephen Pettitt [aut], Syed Haider [aut] |
| Maintainer: | Hui Xiao <hui.xiao at icr.ac.uk> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | revert results |
| Reference manual: | revert.html , revert.pdf |
| Vignettes: |
help (source, R code) |
| Package source: | revert_1.0.0.tar.gz |
| Windows binaries: | r-devel: revert_1.0.0.zip, r-release: revert_1.0.0.zip, r-oldrel: revert_1.0.0.zip |
| macOS binaries: | r-release (arm64): revert_1.0.0.tgz, r-oldrel (arm64): revert_1.0.0.tgz, r-release (x86_64): revert_1.0.0.tgz, r-oldrel (x86_64): revert_1.0.0.tgz |
| Old sources: | revert archive |
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