Other minor fixes for submission to CRAN
(43795b48d6fa4ef4c7485dc0f1675d6a2e4fa574,
325b74ff3193bb94e9062bb6114a30b709324ca8)
restez 2.1.1 (2022-09-05)
BUG FIXES
Fix incorrect warning about max_tries (#45)
restez 2.1.0 (2022-08-31)
BUG FIXES
Fixed bug where restez_status() did not show correct
file size (#32)
Fixed frequent appearance of “Database is garbage-collected” warning
(#33)
Skip scanning of gzipped file if zgrep is not detected
(3de4f95985c9e857eba276c323625c5c32461155)
DOCUMENTATION
Add “Accession filter” to “Tips and Tricks”
(1e30498f91b7efd765fb24243df686e10ee16977)
Use markdown syntax for roxygen2
(ded1466af50562b88fa1bd349fdadbc1081495d3)
NEW FEATURES
Change use of restez_connect() and
restez_disconnect(): they are no longer user-facing, and
instead get run internally for each instance of connecting to the local
database. Also, connection to DB is made in read-only mode, which should
allow for multiple simultaneous processes to access the DB (#33,
#35)
Add ncbi_acc_get() to enable easier querying of GenBank
accession numbers (#37, #43)
Add max_tries argument to db_download() to
automatically re-try download in the event of a drop in internet
connectivity (#36, #42)
Add dnabin argument to gb_sequence_get()
to return sequences in ape DNAbin format (#38, #44)
restez 2.0.0 (2022-07-07)
BUG FIXES
Migrate to duckdb (#18, #26)
DOCUMENTATION
Update to correct github repo (#28)
NEW FEATURES
Add option to connect to database in read-only mode
(91b85f6dd24153c16be1cf74a712e5349e31c679)
OTHER
Switch CI from travis to github actions
(9cc52e888accf489310b604b2636ffbfd0acecd7)
restez 1.1.0 (2022-06-03)
BUG FIXES
Fix bug where single extremely long sequence caused db_create() to
die (#14)
NEW FEATURES
Add ability to filter database by accession number upon creation
(#25)