High-Performance Open-Source Archive
Vector valued library path now works correctly in
lockfile_create() (#864, #868).
pak now handles better PPM binaries on private PPM instances (#863).
Setting use_bioconductor = FALSE (i.e. the
PKG_USE_BIOCONDUCTOR env var, or the
pkg.use_bioconductor option) now truly prevents any network
contact with Bioconductor.
pak now supports macOS binaries on R 4.6.x and later.
pak can now consider installed packages in mutliple libraries,
when installing packages. Pass a character vector of library path as the
lib argument of pkg_install().
pak is now more tolerant with extraneous whitespace in
PACKAGES* metadata files
(https://github.com/r-lib/pak/issues/785).
pak now builds again on FreeBSD (#790).
Installing dependencies of a package file with
deps::<filename> works again (#784).
pak now always uses the correct working directory in the subprocess; this was a common source of errors.
New (nightly) binary builds for aarch64 Windows.
We do not build binary builds for the release candidate of pak
any more, only for stable and devel pak. rc is an alias to
stable now.
pak now supports HTTP basic authentication for CRAN-like repositories. See ‘Authenticated repositories’ in the reference manual.
New function scan_deps() to auto-detect package
dependencies from R code. deps::. automatically uses
detected dependencies now if no DESCRIPTION file is
found.
The dependency solver now uses better heuristics, that works better (=faster) with multiple repositories with large overlaps (https://github.com/r-lib/pkgdepends/pull/392).
pak is now much better at detecting the correct Linux distribution when deciding about PPM and system requirements support.
pak now uses the use_bioconductor configuration
option in meta_*() and repo_*() functions
(#295, #726, @meztez).
No changes.
No changes.
pkg_deps() now accepts a vector of package
names.
The metadata cache now does not use source URLs for packages in
Archive on Posit Package Manager repositories. This URLs
may serve a different package, even a source package when the main URL
for the same package serves a binary package. The alternative URLs are
not needed on PPM, anyway, because PPM is in a consistent state w.r.t.
metadata and package files (#623).
pak now supports gitlab:: package sources better, by
adding explicit syntax to specify subdirectories
(https://github.com/r-lib/pkgdepends/issues/353, @dgkf).
gitlab:: and git:: package sources now
support git submodules if the git-submodules configuration
option is set to TRUE. See ?"pak-config"
(https://github.com/r-lib/pkgdepends/issues/354).
The new ?ignore-unavailable parameter makes it easy
to ignore soft dependencies that are unavailable (#606).
pak now automatically ignores soft dependencies that have an
incompatible OS type (OS_type entry in
DESCRIPTION) when installing packages.
repo_add() and the ppm_*() functions,
e.g. ppm_snapshots(), now work again after the PPM API
changes (https://github.com/r-lib/pkgcache/issues/110,
https://github.com/r-lib/pkgcache/issues/115).
pak now supports using parameters for all packages with the
*=?<param> form. E.g. *=?source installs
all packages from source.
pak now supports R 4.4.0 again, and also Rtools44.
pak can now handle the case when Config/Needs/*
dependencies are requested for package from a repository.
pak uses safer *printf() format strings
now.
pak now correctly handles the latest GitHub release with the
@*release notation (@pawelru,
https://github.com/r-lib/pkgdepends/pull/321)
pak now correctly handles having multiple instances of the same package in the metadata, with different R version requirements (#534, #538, https://github.com/r-lib/pkgdepends/pull/331).
git:: package references work better now for Azure
DevOps (@jameslairdsmith,
https://github.com/r-lib/pkgdepends/pull/333,
https://github.com/r-lib/pkgdepends/pull/342).
pak now does a better job at accepting installed packages, and avoids reinstalling more packages than needed when using a lock file (https://github.com/r-lib/actions/issues/759, https://github.com/r-lib/pkgdepends/pull/338).
pak now requires R >= 3.5.0.
Many improvements in system requirements support:
pkg_sysreqs(): calculate system requirements of
packages.sysreqs_db_list(), sysreqs_db_match(),
sysreqs_db_update(): query the system requirements
database.sysreqs_list_system_packages(),
sysreqs_check_installed(),
sysreqs_fix_installed(): query and install missing system
packages.sysreqs_platforms(): list supported platforms.sysreqs_platform configuration option to override
the auto-detected platform.sysreqs_update configuration option.)New gitlab:: package source to install packages from
GitLab (https://github.com/r-lib/pkgdepends/pull/315).
pak now correctly parses multiple git:: packages at
once (https://github.com/r-lib/pkgdepends/issues/318).
git:: package sources now support version 1 of the
git protocol. E.g. the Bioconductor git repositories now work:
git::https://git.bioconductor.org/packages/limma
(https://github.com/r-lib/pkgdepends/issues/314).
The platforms config parameter now works correctly
with deps:: package sources (#522).
New include_linkingto config parameter to always
include LinkingTo packages in the solution, even for
binaries (https://github.com/r-lib/pkgdepends/issues/485).
pkg_name_check() now does not include Acromine
results, because the web site was unstable.
In repo_add() and repo_resolve() the
MRAN@ prefix is now deprecated and resolves to PPM, because
MRAN will be retired soon. See more at https://posit.co/blog/migrating-from-mran-to-posit-package-manager.
The metadata cache now has SystemRequirements
information for Bioconductor packages.
The meta_*() functions now consider the
platforms, cran_mirror and
r_versions config entries, see
?"pak-config".
Better Posit Package Manager (PPM) support. New
+ppm_has_binaries(), ppm_r_versions(),
ppm_repo_url(), ppm_snapshots() and
ppm_platforms() functions to help interacting with PPM. See
the new ‘pkgcache and Posit Package Manager on Linux’ article at
https://r-lib.github.io/pkgcache. (r-lib/pkgcache#47 and
r-lib/pkgdepends#186).
New system_r_platform() and
system_r_platform_data() functions to query the current
platform.
pak now support git repositories as package references. E.g.
git::https://github.com/r-lib/pak.git.
pak now supports versioned CRAN packages,
e.g. dplyr@1.1.1 will always install dplyr 1.1.1. Note that
only CRAN packages are supported, Bioconductor packages are not
(yet).
pak now has an alternative system requirements lookup
implementation. It supports Fedora and Debian systems as well, in
addition to Debian, Ubuntu, SUSE and RedHat derivatives. You can switch
to this implementation by setting the R_PKG_SYSREQS2
environment variable to true.
pak now does a better job looking up dependencies for
hand-selected dependency types. E.g.
dependencies = "LinkingTo".
pak now removes ?ignore-d packages from
dependencies, and uses the correct version comparison for
?ignore-before.r
(https://github.com/r-lib/actions/issues/708).
pak now does not fail for circular soft dependencies (#306).
pak now reports dependency solver failures better in some cases (#305, https://github.com/r-lib/pak/issues/474).
pak now uses locally built CRAN binaries from the cache. Use the
?nocache parameter to opt out from this, or
cache_delete(package = ...) to remove a package from the
cache.
pak has much improved and more informative error messages now. This work is not yet finished, so if you find an unclear error message, please open an issue. Thank you!
The solver is now more robust for non-canonical input
(e.g. DESCRIPTION files)
(https://github.com/r-lib/pak/issues/423).
Better installation output. Standard output and error are now collected together (https://github.com/r-lib/pkgdepends/commit/0669f0f8c).
The solver is now doing a better job when multiple versions of the same package are present in the same repository (https://github.com/r-lib/actions/issues/559).
pkg_name_check() now works again, it needed a fix
after changes at https://crandb.r-pkg.org.
Explicit package names in local and URL package sources, as in
package=local::... or package=url::... are now
parsed correctly in dependencies.
pak is now more robust to Archs fields missing from
the CRAN metadata for packages with compiled code
(https://github.com/r-lib/pak/issues/448).
url:: packages now always work correctly, even if
the digest package is not installed
(https://github.com/r-lib/pak/issues/433).
pak is now more robust when installing packages from subdirectories of GitHub repositories (https://github.com/r-lib/pak/issues/431, @paleolimbot).
Parameters ?reinstall, ?source and
?ignore now work correctly when specified in the
package=?parameter format (#294).
The ?ignore parameter works correctly now.
Dependency resolution now does not fail if a package is not found.
pak can now install url:: remotes from
GitHub.
pak now does not fail when the package of a .tar.gz
GitHub snapshot is in a subdirectory, or in a subdirectory of a
subdirectory.
pak now errors early if it cannot deduce the name of the package
from a Remotes or Config/Needs/*
entry.
Solver failures now include details in some cases where previously they did not.
pak can now update packages in Docker containers where the old version was installed in the different Docker later (https://github.com/r-lib/pak/issues/251)
Update R version -> Bioconductor version mapping. R 4.2.x now maps to Bioconductor 3.16.
The ?ignore parameter works correctly now.
Dependency resolution now does not fail if a package is not found.
pak can now install url:: remotes from
GitHub.
pak now does not fail when the package of a .tar.gz
GitHub snapshot is in a subdirectory, or in a subdirectory of a
subdirectory.
pak now errors early if it cannot deduce the name of the package
from a Remotes or Config/Needs/*
entry.
Solver failures now include details in some cases where previously they did not.
pak can now update packages in Docker containers where the old version was installed in the different Docker later (#251)
pak errors are now user friendlier and better formatted.
pak now does not load tibble and its dependencies in the pak subprocess, so their dlls are not locked by the pak subprocess on Windows.
pak now does not fail when installing a package that uses a non-UTF-8 encoding on R 4.3.x and later (#404).
pak functions that used to return tibbles return data frames now.
While data frames and tibbles are very similar, they are not completely
compatible. To convert the outputs of pak functions to tibbles call the
tibble::as_tibble() function on them. If the pillar package
is loaded, it improves the printing of the returned data frames.
Relatedly, pak::pak_install_extra() installs pillar now,
instead of tibble.
pak now supports file:// repositories.
pak now uses HTTP 1.1 to download packages on Linux, in addition to macOS. This fixes HTTP issues with some servers (#358).
New ?ignore-before-r parameter to ignore optional
dependencies that need a newer R version
(https://github.com/r-lib/pkgdepends/issues/243).
New ?ignore parameter to ignore an optional
dependency.
Allow specifying downstream package parameters with the
package=?param syntax.
lockfile_install() now works better for
any:: refs, and pak always install the version it has
planned for.
System requirement installation is now more robust and works for Unix shell expressions (#347).
CRAN-like resolution is more robust now if a repository is missing the usual metadata.
The lock file is pretty JSON now.
pak now handles all version requirement types properly: ‘<’,
‘<=’, ==, >=,
>.
The dependency solver now uses better heuristics and does not (effectively) freeze if multiple repositories have multiple versions of the same packages (e.g. RSPM and CRAN) (https://github.com/r-lib/pkgdepends/pull/277)
No user visible changes.
Lots of news, too much to list. This is a completely new package now.
First version on CRAN.
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