Add an option to select the NIMBLE engine in occumb()
(thanks to hoxo-m).
Add a vignette comparing the performance of the JAGS and NIMBLE
engines.
Fix a bug in eval_util_L() and
eval_util_R() that could cause erroneous errors when
species detection probabilities are low.
Some internal changes for package testing.
occumb 1.2.2 (2026/1/9)
This patch release includes internal changes for the anticipated
JAGS 5.0.0 release (thanks to martynplummer) and fixes for
math rendering issues in the package vignettes.
occumb 1.2.1 (2025/7/16)
This patch release only fixes bibliographic information in package
documents.
occumb 1.2.0 (2025/5/23)
Add a data frame input option in occumbData().
Add a data frame output option in get_post_samples()
and get_post_summary().
Add a data frame output option in predict().
Add stats = chi_squared option to
gof().
Internal changes to fix a number of known bugs, more helpful error
messages, and additional testing.
Improved function documentation.
occumb 1.1.0 (2024/3/26)
Add predict() method for occumbFit
class.
Fix summary() method for occumbFit: no
longer outputs comments on convergence and DIC.
Internal changes to fix a number of known bugs, more helpful
messages, and additional testing.
Improved function documentation and vignette.
occumb 1.0.3 (2024/01/04)
Internal changes to fix a number of known bugs, more helpful error
messages, and additional testing.
Improved function documentation.
occumb 1.0.2 (2023/10/19)
Fix license issue: occumb is licensed under GPLv3.
Some document fixes.
occumb 1.0.1 (2023/09/21)
This patch release fixes issues with plot() and
summary() methods not being exported correctly.
It also improves gof() to accept additional arguments
for figure formatting.
occumb 1.0.0 (2023/09/14)
Add z, theta, and phi
arguments to eval_util_L().
Add psi, theta, and phi
arguments to eval_util_R().
Fix eval_util_R() to account for site-heterogeneity of
parameters.
Remove loglik() function from the package.
Some bug fixes, internal changes, and document improvements.
occumb 0.6.1 (2023/07/27)
Add model specification vignette.
Some fixes and improvements of documentation.
occumb 0.6.0 (2023/07/20)
Add package vignette.
Add fish and fish_raw data.
Add occumbGof class.
Add and fix methods for occumbData,
occumbFit, and occumbGof classes.
Change defaults for cores arguments for
gof(), eval_util_L(), and
eval_util_R() functions.
Some bug fixes, internal changes, and documentation
improvements.
occumb 0.5.1 (2023/04/27)
Add pkgdown website.
Some bug fixes and internal changes.
occumb 0.5.0 (2023/04/26)
Add get_post_samples() and
get_post_summary() functions.
Add option for parallel computation in gof()
function.
Fix some bugs in occumb() functions.
Fix an issue of parallel computation of eval_util_L()
and eval_util_R() functions on Windows.
occumb 0.4.2 (2022/12/13)
Fix an issue of parallel computation of eval_util_L()
and eval_util_R() functions on Windows.
occumb 0.4.1 (2022/11/16)
Fix some computational issues in eval_util_L() and
eval_util_R() functions.
occumb 0.4.0 (2022/06/03)
Add eval_util_L() and eval_util_R()
functions.
Add list_cond_L() and list_cond_R()
functions.
occumb 0.3.0 (2022/03/31)
Add gof() function.
Add loglik() function.
Add ... argument to occumb()
function.
Add data field in occumbFit class.
occumb 0.2.1 (2021/11/21)
A few bug fixes.
Add validations for the inputs of occumb().
occumb 0.2.0 (2021/11/19)
Change occumbData class specification and occumbData()
function.
Add occumb() function.
Add methods for occumbFit class: plot,
print, summary.