Full Changelog:
https://github.com/natverse/nat.templatebrains/compare/v1.2…v1.2.1
nat.templatebrains 1.2
Suggest Morpho instead of importing it by @jefferis in
https://github.com/natverse/nat.templatebrains/pull/52
Full Changelog:
https://github.com/natverse/nat.templatebrains/compare/v1.1…v1.2
nat.templatebrains 1.1
Fixes for CRAN after archival (mostly documentation and links)
Feature/fit xform by @jefferis in
https://github.com/natverse/nat.templatebrains/pull/50
dev: check and pkgdown docs now via github actions
Full Changelog:
https://github.com/natverse/nat.templatebrains/compare/v1.0…v1.1
nat.templatebrains 1.0
Flexible via specification for
xform_brain() / shortest_bridging_seq(). This
should allow one to choose particular groups of bridging registration
(e.g. those using the JRC2018F template) even if they are not the
shortest possible path between sample and reference brain (#43)
Add all_templatebrains() which searches across all
packages to find template brains and guess_templatebrain()
which tries to match an image on disk to a templatebrain()
(#35)
xform_brain should not require an explicit target specification for
image data bug (#16)
fix bugs in all_templatebrains() and therefore in
guess_templatebrain() which should now be fast and
functional again (#47)
nat.templatebrains 0.9
shortest_bridging_seq complains if template brain does not exist in
graph (#34)
xform_brain does not transform when sample and reference are
identical (#33)
templatebrain constructor does not need all boundingbox/origin etc
fields to be specified (#24)
as.templatebrain.im3d should not need an im3d made from a file
(#25)
Fix unstated dependencies in ‘tests’ error noted by CRAN r-devel for
0.8.2
nat.templatebrains 0.8
This is another major version bump since there is significant
new/changed behaviour in xform_brain brain and friends which will now
tag transformed objects with a registration template space. This means
that nat functions will typically not be need to told the space of an
object such as a neuron list in many cases, but some objects will have a
new regtemplate attribute.
xform_brain should tag objects with their space (#16)
add regtemplate function as part of this
fix xform_brain should give better error when sample unknown
(#29)
fix: teach plot3d.templatebrain to work with regtemplate (#32)
fix: add_reglist should not return anything (visibly) (#30)
nat.templatebrains 0.7
This is the first public release since 0.6.2 and there are some
significant changes under the hood, hence the major version bump.
fix inversion of reglist objects read from disk (so that xform_brain
calls depending on reglist objects work in both directions).
add support for memoisation of shortest_bridging_seq so that we do
not need to rescan registration directories / reload on disk reglist
objects.
nat.templatebrains 0.6.4
Add regtemplate function and integrate it with xform_brain and
mirror_brain. It will often no longer be necessary to specify the
initial space of objects to be transformed - you’ll still need to
specify your target space though!
nat.templatebrains 0.6.3
add support for reglist objects containing one or more arbitrary
transforms as bridging or mirroring registrations. A function
add_reglist makes it easy to add new in memory reglist objects to those
that can be used for bridging / mirroring between template brains
(#21).
nat.templatebrains 0.6.2
fix issues with git repository cloning on Windows
nat.templatebrains 0.6.1
fix bug in mirror_brain for non-zero origin (#14)
nat.templatebrains 0.6
add functions to download new registrations from git repositories:
add_reg_folder, download_reg_repo, local_reg_dir_for_url,
update_reg_repos.
add tests and documentation for new git functionality.
downloaded registrations are automatically made available on package
load.
nat.templatebrains 0.5
xform_brain can now find the best available path from one template
to another automatically.
this uses new functions bridging_graph, shortest_bridging_seq and
allreg_dataframe
xform_brain now has an imagedata argument (to set sensible defaults
for handling of inverse registrations, which are very slow for image
data)
add doi field to templatebrain object
fix: mirror_brain passes on transform argument
dev: now imports igraph
dev: requires nat >=1.7.0
nat.templatebrains 0.4.1
fix handling of regName in templatebrain
fix as.templatebrain.im3d (completely broken due to variable name
error)
better defaults in as.templatebrain.im3d /
as.templatebrain.character (both name and short name will be take from
file name)
print.templatebrain now includes short name
nat.templatebrains 0.4
prepare for CRAN release
fix export of is.templatebrain
give mirror_brain explicit transform argument
full examples in mirror_brain and xform_brain functions and
templatebrain-meths.
add FCWB.demo as data object that can be loaded
dev: integrate with nat.flybrains build on travis
nat.templatebrains 0.3
add bridging_sequence function to return a bridging registrations
sequence that may span more than 2 template brains.
xform_brain can apply compound registrations in one streamxform call
(but depends on nat >=1.5.9 and CMTK >= 3.2.2)
add is.templatebrain and as.character.templatebrain utility
functions.
switch to single option regdirs for all paths
no longer suggests nat.flybrains but includes basic tests with
internal data.
nat.templatebrains 0.2
move all generic functionality from nat.flybrains (which is now a
data only package).
give xform_brain a via option
add options for directories containing bridging and mirroring
registrations nb these can accept multiple dirs, but registration names
must be globally unique.