Fix Bonferroni correction in the mvMAPIT.Rmd
vignette.
New function binary_to_liability for LT-MAPIT support
and corresponding vignette
Fix CRAN Notes - dependency compatibility.
Performance improvements in C++ implementation:
Eliminated redundant matrix inverse computation in projection
operations
Optimized triple matrix products in Q matrix computation
Added benchmark suite for tracking performance improvements
Typical speedup: 3-8% depending on problem size and test method
mvMAPIT 2.0.3 release
Fix LTO issues again. The R dev automation generates RcppExport.cpp
files that cause LTO issues in this package on CRAN.
mvMAPIT 2.0.2 release
Added Cauchy combination test cauchy_combined including
vignette that compares combination methods
simulate_traits now returns genotype matrix with causal
epistatic variants named according to the trait they affect
Added progress bar and possibility to interrupt C++ routine using
RcppProgress
Fixed “incorrect number of dimensions” error in
simulate_data.R
mvMAPIT 2.0.1 release
Fix LTO issues when submitting to CRAN. The testthat issue
https://github.com/r-lib/testthat/issues/1230 describes the solution
chosen. Created this GitHub gist to reproduce LTO errors:
https://gist.github.com/jdstamp/056475683110aacdb1e6761872ab1e05.
mvMAPIT 2.0.0.1 pre-release
CRAN issue does not show up in R CMD check. Version
upgrade for resubmission.
mvMAPIT 2.0.0 release
fishers_combined and harmonic_combined now
take additional arguments in form of string values. The first determines
the name of the column of the tibble by which to group the p-values. The
second determines the name of the column containing the p-values.
Added Dockerfile and vignette on mvMAPIT in
Docker.
MvMAPIT was renamed to mvmapit.
simulate_phenotypes was renamed to
simulate_traits.
Dependencies were cleaned up, e.g. R requirement 2.10 -> 3.5, old
package dependencies removed.
mvMAPIT 1.1.1-alpha
prerelease
Version that publication data was produced with. No official
release.