Modification replacement of the functions QTL_effect_main_QxE by
QTL_effect_main_QEI and QTL_effect_QxEC by QTL_effect_main_QxEC to
update the procedure to estimate the significance of the QTL by
environment interaction of the parental allelic effects and the
estimation of the sensitivity slope
Correction of a bug to calculate the significance of the QTLxE
effect using the Wald test
mppR 1.4.0
Addition of function to perform multi-parent multi-environment QTL
detection (mppGE_SIM, mppGE_CIM, mppGE_proc, etc.)
Addition of a new vignette to illustrate the multi-parent
multi-environment QTL detection
Extra function (mppData_add_pheno, mppData_mdf_pheno) to manipulate
mppData objects especially modify the phenotypic data
mppR 1.3.0
Correction of few problems to load BCsFt populations
(IBD.mppData).
Addition of new options in MQE_proc: possibility to select a
reference parent effect calculation, possibility to calculate a
confidence interval for the QTL positions
Addition of new functions (QTL_forward, mpp_forward) to realize a
MPP QTL detection using a forward regression strategy
mppR 1.2.1
Correction due to the fact that package synbreed was removed from
CRAN
The possibility to do marker imputation was suppressed.
Small modification in the genetic effect plot. Inversion of
color
mppR 1.2.0
Corrections of bugs affecting the presentation of the QTL additive
effects in: QTL_gen_effects(), MQE_gen_effects(), and the QTL reports of
mpp_proc() and MQE_proc()
Review of the vignette, small modifications in the documentation and
in the error messages
Stop to update the branch ‘mppR_clusthaplo’. Stay two branches:
‘master’ containing the largest version of the package with mixed models
and direct call to clusthaplo, and ‘mppR_CRAN’ a reduced version without
the mixed models and the call to clusthaplo.
mppR 1.1.11
Put dependency to the ‘synbreed’ package as suggested and not
depends
mppR 1.1.10
version of the package contained on branch ‘mppR_CRAN’ published on
CRAN
mppR 1.1.8
submission to CRAN
Revision: suppress the dependency to clusthaplo. Form two branches
on Github: ‘mppR_clusthaplo’ (contain function to call clusthaplo) and
‘mppR_CRAN’