Improved warning messages in ld_clump() (thanks @DarwinAwardWinner).
ld_clump() and ld_matrix() now search for
the plink binary as documented (thanks @DarwinAwardWinner).
Made some minor amends in the helpfiles and vignettes including:
fixing typos, replacing all references to MR-Base with OpenGWAS, and
improving the gwasinfo_files() helpfile.
Fixed bug in headers code in api_query() (thanks @Gaoyan152).
ieugwasr 1.0.3
Add gwasinfo_files() function to return for each dataset specified
the download URL for each file (.vcf.gz, .vcf.gz.tbi, _report.html)
associated with the dataset. The URLs will expire in 2 hours.
ieugwasr 1.0.2
Bump roxygen2 version
Update OpenGWAS API URL
ieugwasr 1.0.1
Checking for allowance depletion, and erroring until the allowance
is reset
Import the magrittr pipe (thanks @Bhashitha2014)
ieugwasr 1.0.0
Introducing JWT authorisation for the API
Phasing out Google Oauth2 authorisation
Added user() function to get user information
Fixing issue with anonymous functions and backwards
compatibility
Bug in tophits when result is empty
Removing version check at startup
Bug in querying when errors returned
Removing unnecessary dependencies and vignettes
ieugwasr 0.2.2
Reinstating https://api.opengwas.org/api/ as the API server
address
Fixing issues with tests failing when server load is an issue
ieugwasr 0.2.1
Updating API server address temporarily
Modifying tests to manage API server load
Fixes to load/attach behaviour
ieugwasr 0.2.0
Moving API address to https://api.opengwas.org/api/
Fixing issues for CRAN release
ieugwasr 0.1.7
Added functions to write LD scores files into compressed
.gz files for each super-population and divided by
chromosomes.
Added argument to output gwasglue2 objects in
ieugwasr::tophits() and
ieugwasr::associations().
ieugwasr 0.1.6
Adding messaging about package version
Adding messaging about OpenGWAS # ieugwasr 0.1.5
Added options to perform LD functions on different
super-populations
Catching 503 error codes and retrying up to 5 times. This should
help avoid fails when the server is busy.
ieugwasr 0.1.4
Bug fixes in clumping. Thanks to bethleegy for pointing this
out
ieugwasr 0.1.3
Bug fixes in clumping
ieugwasr 0.1.2
Updated API address
ieugwasr 0.1.1
Fixed bug in ld_clump - wasn’t doing all traits
ieugwasr 0.1.0
First release in conjunction with API
ieugwasr 0.0.0.9000
Added a NEWS.md file to track changes to the
package.