High-Performance Open-Source Archive
r is used to compute enrichment score (credit to Michael
from Berkeley).list
of character vectors, named by GO term, of genes associated
with each term - can be loaded with data(GO_gene_sets)
[based on Gene Ontology (2015-11-27) and human GO annotations file
validated on 07/08/2016]).S argument of gset is
interpreted when vector of scores r is supplied - now
instead of the scores for S being those at the
corresponding ranks in r, they are those at corresponding
indices. For example, in version 1.0 the scores for S=1:3
would be the top 3 scores in r, however now it be the those
of the first 3 elements of r. Behaviour has not changed for
when S is character or when N is
used instead of r.
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