fix issue when color was set to “none” in
ggkmrisktable
added km_median_table_y_multiplier for better control on where to
put the table on y
added km_linewidth argument
fixed issue with the new ggplot2 geom_violin quantile syntax
ggquickeda 0.3.2
added to possible positions on where to put the N of observations in
Mean and Median tabs: (fixed, mean, median)
added check box to use geom_path: Check box for lines:
Respect data order? (requested by Mark Sale, Certara)
small fixes in the shiny app position_beewwarm and
position_quasirandom removing groupOnX
added arguments show.exptile_values,
show.exptile_values_pos and
show.exptile_values_order to ggkmrisktable()
(requested by Mathilde Marchand, Certara)
added argument km_linewidth to control km curves
linewidths (requested by Sejung Hwang, UCSF)
deprecated gglogisticexpdist() and
ggcontinuousexpdist() in favor of
ggresponseexpdist() with model_type =“logistic” vs “loess”
vs “linear” vs “none”
several ER functions bugs were fixed e.g. when
exposure_distributionand exposure_metric_split
where set to “none”
several additional features to color by endpoint using
fit_by_color_fill TRUE FALSE
several arguments to better control distribution y position
e.g. dist_scale, dist_position_scaler ,
dist_offset
possibility to specify provide custom names for placebo and standard
of care via exposure_metric_soc_name and
exposure_metric_plac_value
possibility to specify “boxplots” for the
exposure_distribution argument in
ggresponseexpdist
possibility to specify “none”, “%”,“N (%)”,“N” for
exposure_distribution_percent
possibility to specify “none”,“left”,“right” for
exposure_distribution_Ntotal
separately control by dose and by exptile mean size
mean_obs_bydose_text_size and
mean_obs_byexptile_text_size
separately control where to put the N by dose or by exptile using
N_byexptile_ypos or N_bydose_ypos with options
“with means”,“top”,“bottom”,“none”, text size is controlled by
N_text_size
added option to add N total by dose for lineranges via
lineranges_Ntotal with options “none”,“left”,“right”
possibility to return the plot and a list of all datasets needed to
redo all layers from scratch via return_list
give user more controls on legends when using
ggresponseexpdist() with arguments:
color_legend_title, fill_legend_title,
linetype_legend_title, shape_legend_title,
linetype_legend_title, and legend_order
ggquickeda 0.3.1
rebuilt docs fixed broken link
fixing some regressions introduced by bookmarking
fixing some errors by the new R rules for logical comparison length
with | versus ||
fixing error in aspect.ratio not numeric (was also
fixed in ggplot2)
fixing other regressions with GGally::ggpairs() color
and group
added support of pasting values of two/three variables where it was
just a placeholder
added function ggkmrisktable() to add facetable risk
tables, km and by ntiles split exposures
added function gglogisticexpdist() and
ggcontinuousexpdist() to add facetable logistic/linear
regression with exposures split to ntiles with exposure distributions by
dose/group and optional y axis projections
added link to github pages in description thanks to @olivroy
Fix part of ggplot2 3.4.0 deprecation warnings. (#27, @olivroy)
ggquickeda 0.3.0
added options to drop levels for user discrete shape and linetype
scales
fixed GGally::ggpairs() group input and added ability
to combine y variables
fixed issue with barplot flip applied to bivariate plots
fixed issues with barplot percent labels when position is fill
added checkboxes to parse x and y axis labels text
added ability to regenerate state of apps to have a better UX
workflow in Phoenix (James Craig, #28)
removed Welcome message and added padding
James Craig added as a co-author
ggquickeda 0.2.2
fixed bug in linear model equation where slope and intercept values
were switched
fixed bug where flip barplot was not working (auto flipped barplot
already supported)
added group aesthetic and other enhancements for pairs plot
bug fixes for expansion, zooming with user input (plots with only x
variable(s) or only y variable(s))
restored target window annotations to work with factor/character x
axis
added the possibility to change the size and linetype of density
plots
added the possibility to choose the shape of boxplot outlier
points
added options for x and y scale tick
formatting are now visible when pairs plot are active
added options for identity line and for placement of custom/target
text at plot edges
added checkbox to recode numeric variables with -99 to missing
removed ggstance dependency by adding needed positions to
global.r
fixed typos in Visualizing Summary Data vignette data labels
ggquickeda 0.2.1
added a new method for factor reordering min/max difference
added the mean +/- multiples of standard deviations summary using
the mean_sdl function
allowed to transform the label for mean and median to 10^ (useful
when the x/y axis are logged)
fixed a namespace bug with calling the scales package
functions like muted or trans_xxx without the
package being loaded, now using ::.
fixed a bug with updateColourInput which is now only
available from the colourpicker package
reactivating the colorgradient widget after shinyjqui
bug was updated and fixed
added distiller continuous Blues and brewer discrete palettes
added possibility to specify palette for viridis discrete and
continuous with possibility to reverse the scale
added more support for POSIXct variables where
previously they were being treated as character
automatic zoom slider is now working with POSIXct
automatic Slider or User zoom now is controllable when facets scales
are free
discrete scale is no longer applied when the x and or y variable
inherits from POSIXct
modifying X/Y scale expansion is now optional (fixed auto expansion
with free facets)
ggquickeda 0.2.0
Added Violin plots
Added options and fixes for histograms, barplots and densities
Added options for Median/Mean/N labels (N digits, justification,
edge positions.)
Added points position_quasirandom and
position_beeswarm
Added multiple enhancements for theme control like
panel.border, plot.tag.position and X and Y
Axes Titles formatting
Added multiple enhancements and options for ggpairs
logticks and rug marks can now be on the outside of plot panel
coordinates cartesian clip can now be set to off
x/y axis percent and comma labels format now works for univariate
plots
x/y zoom now works when more than one x and/or y variables are
selected
long x/y discrete axes labels can now be wrapped to specified
length
UI updates and auto hiding for univariate plots, pairs, km
Boxplots UI rework
Readme updated
summary level data vignette updated
ggquickeda 0.1.9
Made errorbars for Median/PI and Mean/CI ignore mapped size
fixed a bug when labels from Median/PI and Mean/CI and data are
used
table1 enhancements: na.is.category, render.missing, footnote and
caption.
table1 enhancements: added N missing and Sum to stats.
added second field to order and recode variables after stacking
e.g. for xvars and yvars
added two new by variable factor sorting methods: ‘N Unique’ and
‘Sum’
fixed a bug when custom reorder ignored the current order as
starting point
added ggplot tag field
fixed a bug when user was selecting the same variables for x and y
now stacking x and y is separate.
fixed a bug in x axis label and barplots in some special cases
updated UI or barplot and Density and ability to suppress label
legend
UI updates to only show the relevant options for pairs plot and
histogram/barplot
Automatic color theme switching to avoid not enough color or fill
errors
switched to github actions
ggquickeda 0.1.8
Added possibility to use more than one x variable(s) and or no y
variable(s)
Added option for an explicit Missing Category with custom cuts
Added option to compute the inverse of Numeric variables
Moved the rounding to after division/inverse
Added possibility to round data labels before plotting
Added a blank shape type so we can do multiple y(s) when some layers
do not have a point plotted.
Added Docker configuration
ggquickeda 0.1.7
Added support for semicolon separated files and added package
version in App Title
Added geom_rug support for x/y and for additional
variable(s)
Added geom_ribbon for mean/CI and
geom_errorbar for median/PI (with UI updates)
Enable dodge for mean/CI and median/PI to take into account the
specified width
Updated UI for facets options and added controls for bold, angle and
justification
Allowing specifying multi_line=TRUE for all facet
labellers
Added theme options for strip.switch.pad.grid and
strip.switch.pad.wrap
Added possibility to completely remove the facet strips background
and outline
Updated UI for legends options and added controls for legend/legend
box, justification and margins