High-Performance Open-Source Archive
fm_int() for 2D meshes by internally
storing the barycentric coordinate information during the integration
scheme construction (version 0.6.1.9002)face_edge (for 2D meshes), cell_face,
and cell_edge (for 3D meshes) information to
fm_sizes() output (version 0.6.1.9004)fm_basis()
matrices (version 0.6.1.9005)fm_sizes() (version
0.6.1.9006)fm_subdivide() to handle 2-column coordinate
storage inputs. (version 0.6.1.9001)fm_sizes() that
caused calculated areas to be 1/3 of the actual areas (version
0.6.1.9003)expect_setequal() in package tests for checking
that integration output objects contain the correct columns. Some tests
were not using sort() on the names, causing them to fail
when external object merges and constructors changed behaviour. Thanks
to Edzer Pebesma for the initial PR, #30 (version
0.6.1.9007)fmexample objects with the latest
version of the package, to ensure they have up-to-date structure, and
use the current boundary construction methods. (version
0.6.1.9008)fm_subset() method for constructing a subset of a
mesh based on a set of triangle (for fm_mesh_2d) or
tetrahedron (for fm_mesh_3d) indices. (version
0.5.0.9003)fm_zm()/fm_zm_input()/fm_zm_target()
methods for adding/removing/unifying the Z/M dimensions of coordinate
matrices and sf objects (version
0.5.0.9012)new_fm_int() to construct tibbles with the
same output format as the fm_int() method, for user-defined
integration schemes (version 0.5.0.9013)bary=fm_bary() information to
fm_subdivide() output, mapping the new mesh locations to
the original mesh locations, e.g. for interpolating functions from the
original mesh to the new mesh (version 0.5.0.9002)fm_int() for polygons by bulk pre-computing
fm_bary() information instead of separate calls in
fm_vertex_projection() (version
0.5.0.9004)sf geometry XY/XYZ dimensions in
fm_bary()/fm_basis() via fm_zm()
method that is called by fm_onto_mesh() and
fm_unify_coords() to promote XY to XYZ when needed, before
calling sf::st_coordinates(), as
sf::st_coordinates() otherwise fails. (version
0.5.0.9005)fm_int.fm_mesh_1d() to handle lists of matrices
(for interval integration) and vectors (sums over point sets), for more
flexible blockwise integration and summation schemes. (version
0.5.0.9007)fm_int.list() to include non-domain variables in
the output object, e.g. for including per-transect covariates in the
integration scheme. (version 0.5.0.9008)fm_int() for
numeric/character/factor/fm_mesh_1d to handle nested list
samplers (version 0.5.0.9009)gsl package dependency by using a native C++
implementation of the associated Legendre polynomials and spherical
harmonics via fm_raw_basis() (version
0.5.0.9014)fm_subdivide() store the indexing information for
the original mesh locations in $idx$loc (version
0.5.0.9001)$graph$vt triangle
indices (version 0.5.0.9002)crs information in
fm_bary_loc() for 2D spaces (version
0.5.0.9005)fm_mesh_intersection() and
fm_bary() C++ code that caused incorrect behaviour for
locating points on meshes on subsets of the sphere. Also allow
fm_mesh_intersection() to generate non-Delaunay triangles,
allowing the generated meshes to be used for stable integration schemes
(version 0.5.0.9006)weights argument in
fm_basis.matrix() and fm_basis.Matrix() when
full = FALSE (version 0.5.0.9013)0.5.0.9015)CRSargs methods (version
0.5.0.9015)fm_area() method for fm_segm area
calculations (version 0.4.0.9002)fm_nonconvex_hull() a unified function for “fm”
and “sf” construction methods and input/output formats, with default
method “fm” and output format “sf”, making
fm_nonconvex_hull_inla() deprecated. (version
0.4.0.9004)fm_mesh_components() to
fm_components() and add support for fm_segm
objects (version 0.4.0.9001)fm_as_sfc() for
closed boundary fm_segm objects (version
0.4.0.9002)fm_segm as boundary input to
fm_hexagon_lattice() (version 0.4.0.9005)fm_segm integration support for
fm_mesh_2d objects in fm_int() (version
0.4.0.9005)fm_basis.fm_mesh_1d() for
degree = 2 and NA locations (version
0.4.0.9003)sfc objects in fm_int() for
multi-domain integration and give an error, as the user must provide a
geometry name (version 0.4.0.9005)fm_int() sampler for domain lists has
at least one corresponding domain (version 0.4.0.9007)character .block
information in fm_int()/fm_cprod(), forcing
the use of integer, as character could lead to
incorrect block aggregation output ordering. The equivalent information
is now available in .block_origin. Also clean up of
fm_cprod() and sf handling (version
0.4.0.9006)fm_hexagon_lattice() for creating regular hexagonal
lattice points to use with fm_mesh_2d(), from Man Ho Suen
(version 0.3.0.9001 and 0.3.0.9006)fm_mesh_components() method for extracting
(dis)connected components from 2D and 3D meshes (version
0.3.0.9005)fm_collect() method for creating a collection of
meshes of the same type (version 0.3.0.9009)mid
data of fm_mesh_1d for
degree = 2, boundary = "free" (version
0.3.0.9002)delaunay to allow non-Delaunay mesh
construction in fm_subdivide() (version
0.3.0.9003)0.3.0.9004)order > 2 for
fm_fem.fm_mesh_1d() (version 0.3.0.9011) and
generally for fm_matern_precision() (version
0.3.0.9012)units to fm_crs() to allow
setting the length unit for the CRS on creation/extraction (version
0.3.0.9013)fm_mesh_2d_inla() from
0.2.0.9014 to allow negative offset in the second layer
when the inner layer is specified only through a boundary polygon
(version 0.3.0.9007)fm_mesh_2d_inla() to ensure S2 manifold
meshes covering the entire sphere aren’t accidentally limited to a
subset of the globe (version 0.3.0.9008)fm_generate_colors() (version 0.3.0.9008)fm_detect_manifold() that caused it to
return "R2" for "S2" and "M2"
manifolds (version 0.3.0.9010)fm_as_mesh_3d_list() that caused it to
return the mesh surface as an fm_mesh_2d object instead of
the full fm_mesh_3d object (version
0.3.0.9014)fm_bary() output to a dedicated
fm_bary class, with elements ‘index’ (index of the
containing simplex) and ‘where’ (matrix of barycentric weights).
(version 0.2.0.9001)fm_bary_simplex() generic method to extract the
simplex vertex indices for an fm_bary object. (version
0.2.0.9001)fm_bary_loc() generic method for converting
fm_bary information to Euclidean coordinates (version
0.2.0.9005)fm_mesh_3d and new
fm_lattice_Nd class (version 0.2.0.9008 and
0.2.0.9011)fm_assess() method, replicating the old
INLA::inla.mesh.assessment() method (version
0.2.0.9010)fm_qinv() for computing sparse
matrix partial inverses (version 0.2.0.9010)NA location inputs to
fm_basis.fm_mesh_1d() (version
0.2.0.9002)fm_basis object creation, and add
custom_classes developers vignette (version
0.2.0.9004)fm_basis(mesh, loc = fm_bary(mesh, ...)) support
for fm_mesh_1d and fm_mesh_2d objects (version
0.2.0.9006)list() input support for
fm_int.numeric, to allow multiple integration blocks for
discrete domains (version 0.2.0.9012)mappings and defs support to the
geom_fm.fm_mesh_1d() method, allowing separate control of
the ggplot2 aesthetics for basis functions, knots, and
function evaluations (version 0.2.0.9013)character block input to
fm_block methods, to automate multi-domain integration
support from fm_int() (version
0.2.0.9017)fm_try_callstack() more robust against large
callstack sizes; solves “C stack” crash issue for inla()
error reporting (version 0.2.0.9007)fm_bbox.fm_mesh_2d() bug for "S2" and
"M2" manifold meshes (version 0.2.0.9008)fm_rcdt_2d_inla() that lead to ignoring the
quality.spec argument (version
0.2.0.9009)fm_mesh_2d_inla() that improperly ignored
negative offset values when creating meshes based on only
boundary information (version 0.2.0.9014)print.fm_segm() for empty
fm_segm objects (version 0.2.0.9015)fm_mesh_2d_inla(interior = ...) where part
of the code incorrectly assumed interior would be a list.
Now converts a list into a single fm_segm object (version
0.2.0.9016)inla.mesh etc legacy methods;
need to explicitly convert old objects. Retaining the
inla.mesh etc class suffixes for now. (version
0.2.0.9001)fm_basis and
fm_evaluator objects (version 0.1.7.9003)fm_manifold_get() generic method to extract
manifold information from general objects, so that external objects can
implement their own manifold information storage (version
0.1.7.9005)fm_crs_plot() method for plotting
fm_crs objects with optional graticules and Tissot
indicatrices (version 0.1.7.9010)full argument to fm_basis() to toggle
between matrix and full fm_basis object output (version
0.1.7.9002)loc plotting option to
geom_fm.fm_mesh_2d and modify the ggplot
mapping interface for interior and boundary segments in the same method
(version 0.1.7.9009)format="loc" argument to
fm_as_sfc.fm_mesh_2d() for converting mesh node coordinates
to sfc_POINT format (version 0.1.7.9009)fm_lattice_2d() to clarify input interpretation and ensure
correct boundary orientation (version 0.1.7.9001)fm_crs_bounds()
(version 0.1.7.9008)max_batch_size to
fm_bary.fm_mesh_2d(), that can be supplied via
fm_basis(), for optional override of the default maximal
batch calculation size, see #14 (version 0.1.7.9011)sp objects from fmexample data. Use
fmexample_sp() to access them if needed (version
0.1.7.9004)sp dependency to Suggests, and remove
inlabru dependency (version 0.1.7.9006)sp use protection (version
0.1.7.9007)fm_manifold() that made it ignore
all but the first given type options. See #16 (version `0.1.6.9001)plot.fm_mesh_2d vectorisation bug (version
0.1.6.9002)fm_subdivide() method for
fm_mesh_2d meshes (version 0.1.6.9003)plot.fm_mesh_2d() and lines.fm_segm().fm_unify_coords.sf() method. Thanks to
Pablo Paccioretti for debugging and reporting, see #13 (version
0.1.5.9001)fm_bary.fm_mesh_2d() computations for data
sizes of 2e5 and upwards. This improves performance of
fm_basis()/inla.spde.make.A() for large data
sets, see #14 (version 0.1.5.9002)sfc samplers objects to
sf objects in fm_int.list() (version
0.1.5.9003)fm_segm
objects in fm_int.list() (version
0.1.5.9004)fm_basis() and fm_fem() support for
fm_tensor function spaces (version
0.1.5.9005)fm_CRS() support for terra objects
(version 0.1.5.9006)fm_matern_sample() that prevented the use of
a non-NULL loc argument. For earlier versions, the
workaround is to make a separate call to fm_evaluate()
after calling fm_matern_sample().fm_block_log_shift() by an order of
magnitude for multi-block cases.plot.fm_mesh_2d for meshes with 2D
coordinate storage (version 0.1.4.9002)std::get<variant>() lack of support
for MacOS < 10.14.fm_rcdt_2d_inla() that gave different
defaults for the extend and refine arguments
when equal to TRUE, that should be treated the same as
list() (version 0.1.2.9001)fm_rcdt_2d_inla() to properly update
n basis counter element when removing unused vertices.
(version 0.1.2.9002)is.bnd for empty fm_segm objects, and
inconsistent grp vector lengths. (version
0.1.2.9003)tv inputs\text{} to \textrm{}, as AMS
extensions are only supported from R 4.2.2
(https://www.stats.bris.ac.uk/R/doc/manuals/r-devel/R-exts.pdf
2023-08-24, page 90), and CRAN oldrel for macOS is 4.2.0, not 4.2.3plot_PolySet methodsf::st_buffer not supporting
negative distance for s2 with longlat coordinates. Fixes
#5Rcpp (https://cran.r-project.org/package=Rcpp)fm_mesh_2d()
and fm_mesh_1d()fm_crs() and
fm_transform()rgl, and
ggplot2fm_matern_precision()NEWS.md file to track changes to the
package.
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