divent 0.5-4

Bug correction

• metacommunity() ignored argument name.
• div_richness(..., as_numeric = TRUE) returned a value but did not print it.

Features

• coverage.abundances() now accepts argument as_numeric.

divent 0.5-3

Bug correction

• species_distribution() raised an error when input was a vector of factors.

divent 0.5-2

Features

• Generalized Simpson’s entropy: ent_gen_simpson() and div_gen_simpson()
• Faith’s PD: div_pd()
• Allen at al’s phylogenetic entropy: ent_allen()
• Spatially explicit Simpson’s entropy: ent_sp_simpson() and ent_sp_simpsonEnvelope()
• Spatially explicit random communities: rspcommunity()
• species_distribution methods for wmppp and character objects.
• values of abundances are no longer limited to .Machine$integer.max.

External changes

• Replaced Geom*$default_aes by their values for compatibility with ggplot2 3.6.0 (PR #2 by @teunbrand)

divent 0.4-4

Features

• Hurlbert’s diversity: ent_hurlbert() and div_hurlbert().

divent 0.3-16

Features

• Similarity and ordinariness of species.
• Similarity-based diversity: ent_similarity() and div_similarity()
• Rao’s quadratic entropy: ent_rao().
• paracou_6_wmppp dataset.

divent 0.2-5

Features

• Data formats:
  • phylo_divent (phylogenetic tree): as_phylo_divent()
• Phylogenetic diversity: ent_phylo() and div_phylo()
• species names must be valid names

divent 0.1-24

• First Version.

Features

• Data formats:
  • species distribution: species_distribution()
  • metacommunity: metacommunity()
• Sample coverage: coverage()
• Richness: div_richness()
• Shannon’s, Simpson’s and Tsallis’s entropies: ent_shannon(), ent_simpson(), ent_tsallis()
• Hill numbers: div_hill()
• Diversity accumulation: accum_hill()
• Diversity profiles: profile_hill()
• Diversity partitioning: profile_hill()