This version is aimed at CRAN submission: small edits and variations
were made to make it pass the R-CMD-check –as-cran testing, and
presubmission CRAN checks have been solved.
Please note that (differently from previous CRAN release) the
min_SE and min_SP arguments of
markers_distribution() function have now a default value =
0. This means that no threshold values are imposed to SE or SP to be
included in the data.frame that contains the coordinates of the above
computed ROC.
Thus if the user does not set up any threshold, all SE and SP values are
taken into account.
combiroc 0.3.3 - July 1, 2023
modified load_data() function for code consistency in checking
classes of samples’ labels
all unnecessary (leftover) dependencies were eliminated
modified disrupting URLs in readme and vignettes
precomputed objects of vignette 2 were moved out of package and
referenced for download
tarball size of source package was reduced
made some stylistic edits in vignettes
solved other minor bugs
combiroc 0.3.1 - June 28,
2023
Minor changes for vignette knitting consistency and smaller bugs on
dependencies. Namespace and demo datasets related problems were solved.
Documentation consistency between package and second version of preprint
was checked and further enforced.
combiroc 0.3.0 - June 12,
2023
This version of combiroc package enforces the full-fledge single cell
RNAseq workflow. The scRNAseq workflow vignette has been thoroughly
expanded and updated. This version is synchronized with the most updated
version of the biorXiv preprint (the “less is more” version)
New functions were added for data interoperability between combiroc
and Seurat single-cell package
se_sp() function was removed. SE and SP are directly calculated
during combinatorial analysis
New Seurat-style demo data was added
Streamlined combi_score() function for model finding
Bugs and minor changes throughout the package
combiroc 0.2.3 - Aug. 13,
2021
This version of combiroc package is the quasi-stable version ready
for CRAN submission
Final version of vignette with clarified text and examples
Minor tweaks on titles and descriptions throughout the
documentation
Solved build errors on R development version for windows and
ubuntu
Removed unnecessary raw data files from data and test folders
Performed build checks via Travis
Increased code coverage from tests
combiroc 0.2.2 - Aug. 12,
2021
Significant restructuring of the guide (vignette), added more unit
testing, checked for code coverage and a number of minor
misspellings.
combiroc 0.2.1 - Aug. 10,
2021
Minor tweaks on descriptions, hex logo and vignette readability, in
preparation for major release
combiroc 0.2.0 - Aug. 8, 2021
This is still a development version passing all R-CMD-checks
–as-cran. Unit tests on functions have been added for continuous
development. This is to be considered the package’s first usable
version.
combiroc 0.1.0 - July 2021
First public release of the development version. Package is fully
functional but under active development and still prone to be heavily
modified.