further corrections regarding a bug in the Vignette.
coffee 0.4.2
draw.strat now plots gaps better when using BCAD
labels can be plotted in draw.strat (not done by default)
strat runs now write a file ending in _ages.txt, containing the age
estimates (95% ranges, means, medians, modes) into the site’s folder,
and if gaps were modelled, another file ending in _gaps.txt with the
same estimates for the gap sizes.
new function MCMCrings to calculate both age estimates and age
offsets for a C14-dated tree.
corrected a bug in the Vignette.
coffee 0.4.1
further separation of the ‘rice’ and ‘rintcal’ packages within
‘coffee’
added a function ‘strat.cleanup()’ to remove previous runs
coffee 0.4.0
now linking to both the ‘rice’ and ‘rintcal’ packages
updated how gaps in strats are plotted
coffee 0.3.0
updated the vignette
added functions scissors and thinner for manipulation of MCMC
output
enhanced strat code so it runs around 40% faster
previous strat runs can now be reloaded (using run=FALSE)
files are now read and written to faster (using fread, fwrite)
strat iterations can either be loaded into memory or written to
files
added fit measure (and also offset for rings)
coffee 0.2.0
now links to the rintcal package (renamed from IntCal)
the strat function now handles undated levels, blocks of dates, and
different types of gaps (of exactly known length, or according to a
normal or gamma distribution)
coffee 0.1.1
added references to the methods to the DESCRIPTION file
replaced all instances of cat() with message()
the original par settings are now saved if the function is
exited
coffee 0.1.0
this is the first CRAN iteration of the coffee package