High-Performance Open-Source Archive
The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
| Version: | 1.0.3 |
| Depends: | R (≥ 3.5), ape (≥ 5.5) |
| Imports: | methods, robustbase, phylolm (≥ 2.6.5), nloptr, pracma, foreach, doParallel, HDInterval |
| Suggests: | covr, knitr, rmarkdown, spelling, geiger, testthat (≥ 3.0.0) |
| Published: | 2024-10-01 |
| DOI: | 10.32614/CRAN.package.cauphy |
| Author: | Gilles Didier [aut, cph], Paul Bastide [aut, cre] |
| Maintainer: | Paul Bastide <paul.bastide at cnrs.fr> |
| BugReports: | https://github.com/gilles-didier/cauphy/issues |
| License: | GPL (≥ 3) |
| URL: | https://gilles-didier.github.io/cauphy/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | cauphy citation info |
| Materials: | README, NEWS |
| CRAN checks: | cauphy results |
| Reference manual: | cauphy.html , cauphy.pdf |
| Vignettes: |
Example Analysis (source, R code) |
| Package source: | cauphy_1.0.3.tar.gz |
| Windows binaries: | r-devel: cauphy_1.0.3.zip, r-release: cauphy_1.0.3.zip, r-oldrel: cauphy_1.0.3.zip |
| macOS binaries: | r-release (arm64): cauphy_1.0.3.tgz, r-oldrel (arm64): cauphy_1.0.3.tgz, r-release (x86_64): cauphy_1.0.3.tgz, r-oldrel (x86_64): cauphy_1.0.3.tgz |
| Old sources: | cauphy archive |
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