High-Performance Open-Source Archive
Added new functions compare_ard(),
is_ard_equal(), and check_ard_equal(). (#437;
@malanbos)
Adding ard_tabulate_rows() function to tabulate the
number of rows in a data frame. (#531)
as_card now has the argument
check = TRUE which when TRUE will confirm if
the data frame being converted matches the cards spec using
check_ard_structure. To support this,
check_ard_structure has a new argument
error_on_fail which is FALSE by default. When TRUE any
failures will generate an error. (#514)
Users are now messaged if the by or
strata arguments pass columns with different classes in the
ard_tabulate(data,denominator) arguments as this
may cause issues downstream. (#515)
Similar to ard_stack_hierarchical() and
ard_stack(), other ard_*() functions and
nest_for_ard() now contain an args attribute
to retain information about input arguments. (#483)
The ard_stack_hierarchical*() functions now return a
subclass with the calling function name.
The following functions now return an object with an
'args' attribute that contains more contextual information
about the objects’ creation. ard_strata(),
ard_pairwise(), ard_summary(),
ard_tabulate(), ard_tabulate_value(),
ard_hierarchical(), ard_hierarchical_count(),
ard_missing(), ard_mvsummary() and
nest_for_ard() contain an args attribute to retain
information about input arguments. (#483, @alanahjonas95)
Update in ard_tabulate() to account for change in
as.data.frame() being released in R-Devel. (#554)
rename_ard_columns() whereby factor
variables were getting converted to integers and added parameter
fct_as_chr as is used in unlist_ard_columns()
(#542)Updated ard_stack_hierarchical() so that the
denominator dataset only contains the id and
by variables. (#482)
Fixed bug in sort_ard_hierarchical() causing an
error when sorting hierarchical ARDs with more than 2 by
variables. (#516)
shuffle_ard() has been deprecated and will be
maintained in {tfrmt} going forward. (#509)
Updated sort_ard_hierarchical() to allow for
different sorting methods at each hierarchy variable level.
(#487)
Updated sort_ard_hierarchical() and
filter_ard_hierarchical() to always keep attribute and
total N rows at the bottom of the ARD.
Added argument var to
filter_ard_hierarchical() to allow filtering by any
hierarchy variable. (#467)
Added flexibility to filter by by variable
level-specific values when using filter_ard_hierarchical()
to allow for filtering of hierarchical ARDs by difference in two rates.
(#438)
The ard_strata() function has been updated to
include the strata columns in the nested data frames. (#461)
Similar to ard_stack_hierarchical(),
ard_stack() contains an args attribute to
retain information about input arguments.
Added an article illustrating how to summarize long data structures. (#356)
Added ard_stack(.by_stat) and
ard_stack_hierarchical(by_stat) arguments that, when
TRUE (the default), includes a univariate ARD tabulation of
the by variable in the returned ARD. (#335)
shuffle_ard() passes down the args
attribute of the input card object when present. (#484,
@dragosmg)
shuffle_ard() fills overall or group statistics with
"Overall <column_name>" or
"Any <column_name>". (#337, @dragosmg)
shuffle_ard() messages if
"Overall <column_names>" is accidentally present in
the data and creates a unique label. (#465, @dragosmg)
Add ADLB data set. (#450)
ard_continuous() to ard_summary()ard_complex() to ard_mvsummary()ard_categorical() to ard_tabulate()ard_dichotomous() to
ard_tabulate_value()shuffle and .shuffle arguments (for
ard_stack_hierarchical() and ard_stack()) are
deprecated and users encouraged to call shuffle_ard()
directly. (#475, @dragosmg)ard_identity() for saving
pre-calculated statistics in an ARD format. (#379)Updating any fmt_fn references to
fmt_fun for consistency.
Any function with an argument cards::foo(fmt_fn) has
been updated to cards::foo(fmt_fun). The old syntax will
continue to function, but with a deprecation warning to users.
The following function names have been updated:
alias_as_fmt_fun(), apply_fmt_fun(), and
update_ard_fmt_fun(). The former function names are still
exported from the package, and users will see a deprecation note when
they are used.
Importantly, the ARD column named "fmt_fn" has been
updated to "fmt_fun". This change cannot be formally
deprecated. For users who were accessing the ARD object directly to
modify this column instead of using functions like
update_ard_fmt_fun(), this will be a breaking
change.
Fix bug in sort_ard_hierarchical() when hierarchical
ARD has overall=TRUE. (#431)
Fix bug in ard_stack_hierarchical() when
id values are present in multiple levels of the
by variables. (#442)
Fix bug in shuffle_ard() where error is thrown if
input contains hierarchical results. (#447)
Added functions sort_ard_hierarchical() and
filter_ard_hierarchical() to sort & filter ARDs created
using ard_stack_hierarchical() and
ard_stack_hierarchical_count(). (#301)
Updated ard_stack_hierarchical() and
ard_stack_hierarchical_count() to automatically sort
results alphanumerically. (#423)
Added new function unlist_ard_columns().
(#391)
Updated function rename_ard_columns(). (#380)
The function no longer coerces values to character.
The fill argument has been added to specify a value
to fill in the new column when there are no levels associated with the
variables (e.g. continuous summaries).
The unlist argument has been deprecated in favor of
using the new unlist_ard_columns() function.
The function no longer accepts generic data frames: inputs must
be a data frame of class card.
Added function ard_formals() to assist in adding a
function’s formals, that is, the arguments with their default values,
along with user-passed arguments into an ARD structure.
nest_for_ard(). (#411)shuffle_ard() function no longer outputs a
'label' column, and instead retains the original
'variable' level from the cards object. It also no longer
trims rows with non-numeric stats values. (#416)Added functions rename_ard_groups_shift() and
rename_ard_groups_reverse() for renaming the grouping
variables in the ARD. (#344)
Added an option to specify the default rounding in the package:
cards.round_type. See ?cards.options for
details. (#384)
Added the print_ard_conditions(condition_type)
argument, which allows users to select to return conditions as messages
(the default), or have warnings returned as warnings and errors as
errors. (#386)
Added the all_ard_group_n(types) argument to allow
separate selection of groupX and groupX_level
columns.
Added the tidy_ard_column_order(group_order)
argument that allows users to specify whether the grouping variables are
listed in ascending order (the default) or descending order. The output
of ard_strata() now calls
tidy_ard_column_order(group_order="descending").
A new article has been added detailing how to create new ARD functions.
Results are now sorted in a consistent manner, by descending groups and strata. (#342, #326)
label_cards() has been renamed to
label_round(), which more clearly communicates that is
returns a rounding function.Added functions as_cards_fn(),
is_cards_fn(), and get_cards_fn_stat_names().
These functions assist is creating functions with attributes enumerating
the expected results.
Updated ard_continuous() and
ard_complex() to return full ARDs when functions passed are
created with as_cards_fn(): instead of a single row output,
we get a long ARD with rows for each of the expected statistic names.
(#316)
Added function ard_pairwise() to ease the
calculations of pairwise analyses. (#359)
Improved messaging in print_ard_conditions() when
the calling function is namespaced. (#348)
Updated print method for 'card' objects so
extraneous columns are never printed by default.
check_pkg_installed(),
is_pkg_installed(),
get_min_version_required(),
get_pkg_dependencies(). These functions are now
internal-only. (#330)tidy_ard_column_order() now correctly orders
grouping columns when there are 10+ groups. This also corrects an issue
in the hierarchical functions where the ordering of the variables
matters. (#352)Added functions ard_stack_hierarchical() and
ard_stack_hierarchical_count() that ease the creation of
ARDs for multiple nested or hierarchical structures. (#314)
Added functions update_ard_fmt_fn() and
update_ard_stat_label() to update an ARD’s formatting
function and statistic label, respectively. (#253)
Added rename_ard_columns(unlist) argument, which
unlists specified columns in the ARD data frame. (#313)
Added ard_strata() function to ease the task of
calculating ARDs stratified by one or more other categorical variables.
(#273)
Added functions mock_continuous(),
mock_categorical(), mock_dichotomous(),
mock_missing(), mock_attributes() to build
ARDs in the absence of a data frame. Where applicable, the formatting
functions are set to return 'xx' or 'xx.x' to
aid in the construction of mock tables or table shells. (#256)
Added functions for printing results from
eval_capture_conditions(). Captured conditions can be
printed as either errors or messages with
captured_condition_as_error() and
captured_condition_as_message(), respectively.
(#282)
The ard_hierarchical_count() function has been
updated to match the behavior of ard_hierarchical() and
results are now only returned for the last column listed in the
variables arguments, rather than recursively counting all
variables.
Add columns 'fmt_fn', 'warning', and
'errors' to ard_attributes() output.
(#327)
Add checks for factors with no levels, or any levels that are
NA into ard_* functions (#255)
Any rows with NA or NaN values in the
.by columns specified in ard_stack() are now
removed from all calculations. (#320)
Converted ard_total_n() to an S3 generic and added
method ard_total_n.data.frame().
Added the bind_ard(.quiet) argument to suppress
messaging. (#299)
Improved ability of shuffle_ard() to populate
missing group values where possible. (#306)
Added apply_fmt_fn(replace) argument. Use
replace=FALSE to retain any previously formatted statistics
in the stat_fmt column. (#285)
Added bind_ard(.distinct) argument, which can remove
non-distinct rows from the ARD across grouping variables, primary
variables, context, statistic name and value. (#286)
Fix in print_ard_conditions() when the variables
were factors, which did not render properly in
cli::cli_format().
Bug fix in print_ard_conditions() and we can now
print condition messages that contain curly brace pairs. (#309)
Update in ard_categorical() to use
base::order() instead of dplyr::arrange(), so
the ordering of variables match the results from
base::table() in some edge cases where sorted order was
inconsistent.
Update in ard_categorical() to run
base::table() output checks against coerced character
columns. Previously, we relied on R to perform checks on the type it
decided to check against (e.g. when it coerces to a common type). While
the initial strategy worked in cases of Base R classes, there were some
bespoke classes, such as times from {hms}, where Base R does not coerce
as we expected.
Adding selectors all_group_n() and
all_missing_columns(). (#272, #274)
Added new function add_calculated_row() for adding a
new row of calculated statistic(s) that are a function of the other
statistics in the ARD. (#275)
Converting ard_*() functions and other helpers to S3
generics to make them extendable. (#227)
Added helper rename_ard_columns() for
renaming/coalescing group/variable columns. (#213).
Added new function ard_total_n() for calculating the
total N in a data frame. (#236)
Added the nest_for_ard(include_data) argument to
either include or exclude the subsetted data frames in a list-column in
the returned tibble.
Added check_ard_structure(column_order, method)
arguments to the function to check for column ordering and whether
result contains a stat_name='method' row.
Added the optional ard_hierarchical(id) argument.
When provided we check for duplicates across the column(s) supplied
here. If duplicates are found, the user is warned that the percentages
and denominators are not correct. (#214)
Improved messaging in check_pkg_installed() that
incorporates the calling function name in the case of an error.
(#205)
Updated is_pkg_installed() and
check_pkg_installed() to allow checks for more than package
at a time. The get_min_version_required() function has also
been updated to return a tibble instead of a list with attributes.
(#201)
Styling from the {cli} package are now removed from errors and
warnings when they are captured with
eval_capture_conditions(). Styling is removed with
cli::ansi_strip(). (#129)
Bug fix in ard_stack() when calls to functions were
namespaced. (#242)
The print_ard_conditions() function has been updated
to no longer error out if the ARD object does not have
"error" or "warning" columns. (#240)
Bug fix in shuffle_ard() where factors were coerced
to integers instead of their labels. (#232)
Corrected order that ard_categorical (strata)
columns would appear in the ARD results. Previously, they appeared in
the order they appeared in the original data, and now they are sorted
properly. (#221)
The API for ard_continuous(statistic) and
ard_missing(statistic) arguments has been updated.
Previously, the RHS of these argument’s passed lists would be either
continuous_summary_fns() and
missing_summary_fns(). Now these arguments accept simple
character vectors of the statistic names. For example,
ard_categorical(statistic = everything() ~ c("n", "p", "N"))
and
ard_missing(statistic = everything() ~ c("N_obs", "N_miss", "N_nonmiss", "p_miss", "p_nonmiss")).
(#223)
Updated ard_stack() to return n,
p, and N for the by variable when
specified. Previously, it only returned N which is the same
for all levels of the by variable. (#219)
Bug fix where ard_stack(by) argument was not passed
to ard_missing() when
ard_stack(.missing=TRUE). (#244)
The ard_stack(by) argument has been renamed to
".by" and its location moved to after the dots inputs,
e.g. ard_stack(..., .by). (#243)
A messaging overhaul to utilize the scripts in
https://github.com/ddsjoberg/standalone/blob/main/R/standalone-cli_call_env.R.
This allows clear error messaging across functions and packages.
(#42)
print_ard_conditions(call),
check_list_elements(env), cards_select(.call)
arguments have been removed.
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