High-Performance Open-Source Archive
Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | igraph, Hmisc, parallel, ggplot2, grDevices, graphics, rlang, stats, utils |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2026-05-28 |
| DOI: | 10.32614/CRAN.package.SAFEMCN |
| Author: | Xiaotong Xu [aut, cre], Yue Zheng [cph] |
| Maintainer: | Xiaotong Xu <xxt19992014 at 163.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | SAFEMCN results |
| Reference manual: | SAFEMCN.html , SAFEMCN.pdf |
| Package source: | SAFEMCN_1.0.0.tar.gz |
| Windows binaries: | r-devel: SAFEMCN_1.0.0.zip, r-release: SAFEMCN_1.0.0.zip, r-oldrel: SAFEMCN_1.0.0.zip |
| macOS binaries: | r-release (arm64): SAFEMCN_1.0.0.tgz, r-oldrel (arm64): SAFEMCN_1.0.0.tgz, r-release (x86_64): SAFEMCN_1.0.0.tgz, r-oldrel (x86_64): SAFEMCN_1.0.0.tgz |
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