read_npx() (and its alias read_NPX()) has
been fully rewritten with improved architecture, splitting the
monolithic reader into dedicated sub-readers for each file format:
Excel, delimited (CSV/TSV), Parquet, ZIP archives, and wide-format qPCR
exports
New parameters have been added for greater control over data import:
out_df (output format), long_format,
olink_platform, data_type,
.ignore_files, quiet, and
legacy.
Automatic detection of file format, Olink platform, and data
type.
New
check_npx() function (@klevdiamanti, @MasoumehSheikhi & @KangD-dev)
A new exported function check_npx() validates NPX data
for correctness and completeness before downstream analysis.
Checks include: column name standardization, OlinkID validity,
assays with all-NA values, duplicate sample identifiers, column data
types, assay QC warnings, UniProt mapping consistency, and DarID
validity.
Returns a structured list with detailed diagnostics that can be used
as input to clean_npx().
The list check log output from check_npx() is now used
in all the functions in downstream analysis to allow for alternative
column names and provide consistent and informative warnings and errors
when data issues are detected.
New
clean_npx() function (@klevdiamanti & @KangD-dev)
A new exported function clean_npx() applies an
automated quality-control cleaning pipeline to remove unsuitable data
records.
Cleaning steps include: removing assays with invalid OlinkIDs,
removing assays with all-NA quantification values, removing duplicate
samples, removing external control samples, removing QC-failing samples,
removing internal control assays, removing assays with QC warnings,
correcting column data types, and resolving non-unique UniProt
mappings.
Each cleaning step can be individually toggled on or off.
Vignettes
moved to OlinkAnalyzeVignettes (@klevdiamanti & @dtopouza)
All vignettes except from the main guide-Vignette (LOD, outlier
exclusion, bridging introduction, cross-product bridging, and plate
randomizer) have been moved to the sibling package OlinkAnalyzeVignettes
that will be online soon, to reduce package size and installation
time.
Some functions, such as read_NPX(), have been renamed
to their equivalent snake case read_npx() to be more
intuitive and consistent with R naming conventions. Previous function
names are retained as aliases for backward compatibility.
Minor
Changes (@klevdiamanti, @kathy-nevola, @KangD-dev, @dtopouza, @kristynchin-olink, @amrita-kar & @kristianHoden)
arrow, duckdb, and dbplyr are
now imported for enhanced Parquet file support and efficient data
processing.
cli is now used for most user-facing messages,
warnings, and error reporting
The magrittr pipe (%>%) has been
replaced by the native R pipe (|>). throughout the
package; magrittr is no longer a dependency.
A new olink_osi_dist_plot() function has been added for
visualizing Olink Sample Index (OSI) values distributions.
The functions olink_qc_plot(),
olink_pca_plot() and olink_umap_plot() now
have full support for OSI values.
Internal input validation has been improved with a suite of
type-checking helper functions.
Test infrastructure has been expanded with parallel test execution
enabled via testthat edition 3, and test coverage extended
to >90%.
Several dependencies have been moved from Imports to Suggests
(broom, car, emmeans,
ggpubr, ggrepel, readxl,
rstatix, FSA) to reduce the package’s
installation footprint
Olink Analyze 4.5.0
Minor Changes
Added section to LOD vignette about how to handle LOD in bridged
data (#656, @KangD-dev)
Support for NPX files from NPX Map 2.0 was added to read_NPX (#660,
@kathy-nevola)
Continuous color scale was added to PCA for graphing Olink Sample
Index (OSI) continuous columns (#659, @amrita-kar)
Function for formatting bridged data was updated to work with other
types of normalization (#643, @dtopouza, #644, @klevdiamanti)
Bug Fixes
olink_ordinalRegression changed from type = 3 to type = “marginal”
to work with newest version of ordinal package (#657, @kathy-nevola)
Regex fixed for DarID detection in olink_lod and read_NPX (#658,
@kathy-nevola)
Olink Analyze 4.4.0
Minor Changes
Added support for bridging Olink Explore HT and Olink Reveal (#645,
#636, #639, @boxizhang, @amrita-kar, @kathy-nevola, @dtopouza, @klev-diamanti)
Add warning message for specific DarID-SW export combinations that
require re-export (#635, @kathy-nevola)
Added instructions for how to add LOD data to cross product bridging
(#642, @KangD-dev)
Bug Fixes
Fix wording of bridgeable assays in cross-product bridging tutorial
(#632, #630, @kathy-nevola)
Fixed warning message in case of duplicate samples so that samples
with control assays did not count as duplicated samples (#634, @amrita-kar)
QS Normalization will now exclude bridge samples with NA with
warning, preventing error (#640, @klev-diamanti)
Olink Analyze 4.3.2
Bug Fixes
Tests for olink_wilcox() are now arranged by Assay name
to handle ties (#616, @boxizhang)
The extrafont package has been removed as a dependency
as it is archived on CRAN (#619, @klevdiamanti)
Regex in olink_lmer() has been improved to better
capture the warning message (#618, @klevdiamanti)
Handling for when AssayQC is not present in both data
sets for normalization (#620, @klevdiamanti)
Olink Analyze 4.3.1
Bug Fixes
olink_lod() call to checkNPX() now
correctly uses data instead of df, allowing the function to run without
error (#579, @klevdiamanti)
broken link in bridging tutorial has been fixed (#597, @amrita-kar)
minor edits have been made to the bridging tutorial and
olink_bridgeselector() to clarify how to set
sampleMissingFreq argument for different products and
biological contexts (#597, @amrita-kar, #596, @kathy-nevola)
minor edits have been made to the bridging tutorial to clarify that
Ct and count data is not normalized during bridging and to define a
batch (#597, @amrita-kar)
Olink Analyze 4.3.0
Minor Changes
Recommended Olink Reveal bridge sample numbers have been added to
the bridging tutorial (#523, @kathy-nevola)
Missing meta-data in parquet files now result in a warning instead
of an error (#540, @OlaCaster)
Pathway enrichment updated to support msigdbr v10.0 (#542, @klevdiamanti)
Support for PanelVersion and LODNPX was added (#551, #552, #559,
@klevdiamanti,
@MasoumehSheikhi)
Support for new version of warning message when converting LME
results to tidy format has been added (#565, @kathy-nevola)
Improvements made to user interface for olink_bridgeability_plot()
(#525, #522, @klevdiamanti)
Bug Fixes
Fixed bug causing missing significance stars in olink_boxplot (#536,
@boxizhang)
Files with multiple quantification files will now select the
quantification method to use (#563, @kristynchin-olink, @amrita-kar)
OlinkIDs with multiple UniProt IDs across different panel versions
will now be harmonized to one UniProt ID to allow for assays to be
analyzed together (#564, @kathy-nevola)
Olink Analyze 4.2.0
Minor Changes
Cross-product bridging is now supported for bridging Olink Explore
3072 to Olink Reveal (#509, @kathy-nevola)
Standard data exports from NPX Signature 2.0 are now supported
(#511, @KangD-dev)
Kang Dong and Stephen Pollo have been added as authors (#514, @kathy-nevola)
MaxLOD will be recalculated after bridging to reflect the MaxLOD
across all projects (#505, @klevdiamanti)
Bug Fixes
A warning message will be displayed when fewer than the recommended
number of bridging samples are used in cross product bridging (#507,
@klevdiamanti)
If count data is not provided in cross-product bridging, an error
message will occur (#510, @kristynchin-olink)
For cross-product bridging, if the sample type and assay warning
columns do not have the same column naming (ex: SampleType and
Sample_Type), both columns will be included in the output. (#515, @spollo-olprot, @MasoumehSheikh)
Olink Analyze 4.1.1
Minor Changes
Images were decreased in dimension to meet CRAN Size requirements
(#500, @kathy-nevola)
Bug Fixes
Dataframe name was corrected in Olink Explore 3072 to Olink Explore
HT bridging tutorial Downstream Analysis section. (#500, @kathy-nevola)
Olink Analyze 4.1.0
Minor Changes
Functionality has been added to read_NPX, olink_lod, and
olink_plate_randomizer to support additional data types (#487, @kathy-nevola)
A new function has been added to visualize the criteria used to
establish the recommended bridging method for an assay in cross-product
bridging (#468, @amrita-kar)
A new function has been added to simplify data wrangling on bridged
data after cross-product bridging (#472, @dtopouza)
The tutorial on Olink Explore 3072 to Explore HT bridging has been
updated to reflect the new functions (#473, @kristynchin-olink)
Documentation for plate randomization when keeping samples from the
same studies together has been improved in function documentation and
the Plate Randomization tutorial (#483, @kathy-nevola)
Contact us and legal disclaimer information has been updated and
added to all tutorials (#490, @kathy-nevola)
A Research Use Only (RUO) message is now printed when reading
parquet files (#487, @kathy-nevola)
References to NPX Explore have been generalized to Olink Software in
tutorials (#490, @kathy-nevola)
The overview tutorial has been updated and streamlined (#473, @kristynchin-olink)
Bug Fixes
Assay CTRL is no longer characterized as a control assay (#484,
@dtopouza)
An error that had previously limited Explore HT to Explore HT
bridging has been resolved (#491, @klevdiamanti)
The minimum number of bridge samples for QS normalization has been
corrected to 40 samples.
The Block column is now transformed into a character value to ensure
consistency across products.
An error that had previously impacted paired Wilcoxon tests has been
resolved. (#485, @boxizhang)
Olink Analyze 4.0.2
Bug Fixes
Product is now identified by column name for cross-product
normalization, rather than OlinkIDs. This allows for non-overlapping
assays to be present in input files. (#469, @kathy-nevola)
Added many-to-many mapping in joining Explore HT data to the mapping
file to support correlation assays (#469, @kathy-nevola)
Corrected spelling in error message. (#469, @kathy-nevola)
Fixed typo in NotBridgeable category name in tutorial (#471, @dtopouza)
Olink Analyze 4.0.1
Minor Changes
larger rds files used for unit tests have been excluded from build
to abide by CRAN size limitations (#462, @kathy-nevola)
Olink Analyze 4.0.0
Major Changes
olink_normalization can now be used for bridging Explore 3072 data
to Explore HT data (#453, #452, #439, #449, #447,#446, #441, #440, #434,
#422, #436, #435 @klevdiamanti, @kathy-nevola, @kristynchin-olink, @dtopouza, @amrita-kar, @MasoumehSheikh)
olink_normalization has undergone major changes to improve speed,
reproducibility, and extending functionality (#418, @klevdiamanti, @kristynchin-olink, @MasoumehSheikh)
Minor Changes
New tutorial has been added to explain and support Explore 3072 to
Explore HT bridging (#448, #428, #427, #426, #425, #424, #423, @kristynchin-olink, @boxizhang, @dtopouza, @kathy-nevola, @MasoumehSheikh)
Update FAQ links in tutorials with queries links (#451, @kathy-nevola)
Decrease package size on Mac and Linux (#445, @kathy-nevola)
Removed redundant information from overview vignette (#458, @kathy-nevola)
Bug Fixes
Add support back for files with quotes to read_NPX (#431 @kathy-nevola)
Olink Analyze 3.9.1
Bug Fix
Extra set of parentheses removed from vignette (#430, @kathy-nevola)
Olink Analyze 3.9.0
Minor Changes
Explore HT recommended bridging samples have been added to
Introduction to Bridging tutorial (#409, @kathy-nevola)
Support for CSVs with SampleQC column was added to read_NPX (#406,
@kathy-nevola)
Support for Olink Analyze Export parquets was added to read_NPX
(#408, @kathy-nevola)
Quantitative value csvs will now give a warning about limited
support for Quant data (#406, @kathy-nevola)
Instructions for importing multiple NPX files has been added to the
overview tutorial (#403, @dtopouza)
Additional background information was added to the LOD tutorial to
clarify how LOD is calculated from counts (#404, @kathy-nevola)
LOD can now be calculated using fixed LOD, negative controls, or
both methods (#390, @kathy-nevola)
An error message will now appear when running anova and control
assays are present (#416, @dtopouza)
Danai Topouza’s role has been changed from contributor to author
(#415, @kathy-nevola)
Bug Fixes
URLs in tutorials will now direct to updated olink.com locations
(#402, @kathy-nevola)
Instructions to export parquet files with LOD have been updated
(#408, @kathy-nevola)
removed scale_name argument when ggplot2 3.5+ is installed (#421,
@kathy-nevola)
Olink Analyze 3.8.2
Bug Fixes
update to URL hyperlink in LOD tutorial to include https
data with Plate_LQL and PlateLQL columns in long format will now be
supported (#392, @klevdiamanti)
Olink Analyze 3.8.1
Bug Fixes
update to outdated URL in LOD tutorial
Olink Analyze 3.8.1
Minor Changes
Function support for calculating LOD for Explore data (#355, @kathy-nevola, @klevdiamanti, @leiliuC)
Tutorial and documentation for calculating LOD for Explore data
(#364, @MasoumehSheikh, @kristynchin-olink, #388, @kathy-nevola, @amrita-kar)
Addition of Danai Topouza as contributor and Kristyn Chin as author
(previously contributor) (#365, @kathy-nevola)
Bug Fixes
Removed outdated reference to NPX Manager (#354, @dtopouza)
Removed mention of Welch’s t-test in Mann Whitney documentation
(#354, @dtopouza)
Assays that include apostrophes will now be read in correctly from
long format csvs (#381, @kathy-nevola)
Olink Analyze 3.7.0
Minor Changes
Support for Explore 3072 data in parquet form added (#327, @kathy-nevola, @klevdiamanti)
Support for pathway enrichment when LOD is not present added (#329,
@kathy-nevola)
Clarification to remove controls when selecting bridging samples
added in bridging tutorial (#330, @kathy-nevola)
Addition of Kristyn Chin as contributor (#331, @kathy-nevola)
Addition of URLs and Contact information in Description (#331, @kathy-nevola)
Olink Analyze 3.6.2
Bug Fixes
Packages in Suggest field are now called conditionally in vignettes,
tests, and examples. (#319, @kathy-nevola)
read_NPX will now work with Target 96 data that does not contain
“Target 96” in the panel name (#320, @kathy-nevola)
olink_lmer will no longer require the presence of an Index column in
the data (#321, @kathy-nevola)
corrected examples for subset normalization (#312 @kathy-nevola)
added additional information on example data to outlier vignette
(#313 @kathy-nevola)
clarified documentation for longitudinal randomization (#314 @kathy-nevola)
corrected warning message for olink_ordinalRegression (#296 @boxizhang)
Olink Analyze 3.6.1
Minor Changes
Install package Matrix from source in CI. (#299 @klevdiamanti, @AskPascal)
Olink Analyze 3.6.0
Minor Changes
Plate LOD will be chosen over Max LOD when both are present (#288,
@kathy-nevola)
Data from NPX Signature 1.8+ is now supported by read_NPX when in
long format csv (#293, @Orbmac, @kathy-nevola)
olink_pca_plot will now be faster (#289, @MasoumehSheikh)
Bug Fixes
olink_normalization and related function will now compare
normalization strategy by assay (#291, klevdiamanti)
Excluded assays will not cause warnings in olink_normalization
(#291, klevdiamanti)
olink_pca_plot will now show the same label and text for point when
SampleID is numeric (#289, @MasoumehSheikh)
Olink Analyze 3.5.1
Bug Fixes
read_NPX will now support additional formats of parquet files
Olink Analyze 3.5.0
Minor Changes
read_NPX will now detect and import Flex excel files in wide format
(@kathy-nevola,
#234)
Add example of bridge samples selector and minor updates for clarity
to Intro to bridging vignette (@Orbmac, @kathy-nevola, #260)
Increase plate randomizer unit test coverage (@amrita-kar, #264)
Add support for parquet files in read_NPX (@kathy-nevola, #265, @klevdiamanti,
#270)
Add support for alternative forms of LOD including Max and Plate LOD
(@kathy-nevola,
#267)
Add support for SampleQC column (alternative to QC_Warning) (@kathy-nevola, #267,
@MasoumehSheikhi, @268)
Add support for plate randomization with variable control numbers
(@kathy-nevola,
@AskPascal,
#269)
Controls can now be randomized across the plate with
olink_plate_randomizer (@kathy-nevola, @AskPascal, #269)
Minor updates for clarity to Plate Randomization vignette (@kathy-nevola, @AskPascal, #269)
Change formatting for long format Target CSVs to match excel (@kathy-nevola,
#273)
Bug Fixes
Project name is now consistent and generic throughout bridging
vignette (@kathy-nevola, #257)
Estimate is now included in output when Paired Mann-Whitney U test
is performed (@boxizhang, #259)
Olink Analyze 3.4.1
Bug Fixes
Skip PCA snapshot tests in R version > 4.2.3 (@AskPascal, #254)
Bridge selector will now return all samples when requesting max
number of samples based on missing frequency (@klevdiamanti, #252)
Fixed unit tests to expect NA as logical instead of “NA” as
character (@MasoumehSheikhi, #250)
Olink Analyze 3.4.0
Minor Changes
User can now specify label for proteins in olink_heatmap_plot()
(@simfor, #228)
Updates to unit test and CI based on dependency changes (@AskPascal, #231, #236,
#240)
Addition of normalization functions to simplify bridge, subset, and
multi-batch normalization (@klevdiamanti, #201)
Introduction to bridging vignette added (@leiliuC, @kathy-nevola, #174)
Update to olink_wilcox documentation and UniProt description in
documentation has been corrected (@boxizhang, #235)
Olink Analyze 3.3.1
Bug Fixes
olink_pathway_enrichment now prints a message when there are non
matching names when using method = “ORA” (@MasoumehSheikhi, #222)
olink_pca_plot will now generate PCA when data is missing from the
first OlinkID (@kathy-nevola, #221)
read_NPX now supports csv files with Sample_Type column but not
ExploreVersion column (@klevdiamanti, #220)
extra columns in input file will no longer result in a warning
message (@kathy-nevola, #223)
Olink Analyze 3.3.0
Minor Changes
Support for additional versions of Olink data - Read_NPX now
supports a wider range of Olink data types (@AskPascal, @kathy-nevola, #207, #208, #211,
#216)
Automatic support for normalizing 2 datasets with different column
configurations - olink_normalization will now automatically add missing
columns to datasets (filled NA) to allow data with different
configurations to be more easily normalized together (@kathy-nevola,
#212)
Automatic checking that datasets used the same normalization method
before bridging - Datasets that were normalized with different methods
(different values in normalization column) will now warn before
performing normalization (@klevdiamanti, #210)
Bug Fixes
Data with ‘#’ in SampleID column is now supported (@AskPascal, #208)
PCA can now be generated when indices are not consistent across
SampleIDs (@amrita-kar, #206)
Olink Analyze 3.2.2
Bug Fixes
remove www. from links in vignette to prevent rerouting of URL
(@kathy-nevola,
#188)
update set_plot_theme() to use linewidth instead of size per ggplot2
3.4
Olink Analyze 3.2.1
Bug Fixes
Change in unit test to write to temporary directory (@AskPascal, #181)
Olink Analyze 3.2.0
Minor Changes
Addition of functions to perform Uniform Manifold Approximation and
Projection (UMAP) dimensional reduction and plots (@simfor, #139)
Add additional install methods to Readme (@AskPascal, #153)
ggrepel can now be disabled when outlier lines are present in the
PCA plot (@klevdiamanti, #158)
Long running unit tests are now skipped on CRAN (@AskPascal, #163)
Internal functions were added to read_NPX to support future
development (@klevdiamanti, #167)
CI workflows were refactored to utilize external actions (@AskPascal, #169)
Read_NPX will now warn the user when NAs are detected in the NPX
column (@AskPascal,
#170)
Friedman test interface and documentation was updated to be more
intuitive (@boxizhang, #171)
Bug fixes
Pathway enrichment p-values are now in the correct order when
plotting (@klevdiamanti, #164)
PCAs now behave the same with any locale (@AskPascal, #173)
Read_NPX now accepts either Panel_Version or Panel_Lot_Nr in input
files (@klevdiamanti, #156)
Assays that only have NPX = NA will now be excluded from all
analyses and figures (@simfor, @kathy-nevola, @AskPascal, #176)
Refactor code to use tidyselect::all_of() in recommended way (@AskPascal, #177)
vdiffr based unit tests were reactivated (@AskPascal, #172)
Olink Analyze 3.1.0
Minor Changes
Non-parametric functions are now available (@boxizhang, #114, #142)
Updated installation instructions to reflect CRAN acceptance (@kathy-nevola,
#107)
Zipped files from MyData can now be used as input for read_NPX
(@klevdiamanti,
#115)
LME and ANOVA formulas can now be customized (@jrguess, #120)
Pathway enrichment functions and visualizations are now available
(@kathy-nevola,
#125)
Heatmaps can now be generated (@Orbmac, $127)
olink_boxplot function now has significance bars and stars (@boxizhang, #132)
PCA preprocessing was moved to internal function (@simfor, #133)
olink_plate_randomizer will now return a warning if there are
duplicate SampleIDs or if SubjectColumn is missing (@kristianHoden,
#146)
olink_plate_randomizer can now keep studies together on plates
(@kristianHoden, #146)
Added Masoumeh Sheikhi and Boxi Zhang as authors
Added Kristian Hodén as contributor
Bug Fixes
olink_pca_plot by Panel will now show correct colors when a variable
is missing (@MasoumehSheikhi, Issue #117, Commit
0f2f157)
olink_ttest will now return a warning message if an assay has less
than 2 datapoints in a group. (@marisand, #110)
LMER class is now checked using inherits (@MasoumehSheikhi, #134)
License was corrected to AGPL-3 (@Orbmac, #138)
Correct output type of olink_dist_plot in vignette to ggplot object
(@kathy-nevola,
Issue #112, #141)
Previously called “intensity normalization” has been clarified as a
special type of subset normalization and an example has been added to
the documentation and vignette (@Orbmac, #144)
Olink Analyze 3.0.0
Major Changes
displayPlateDistributions and displayPlateLayout names were updated
to olink_displayPlateDistributions and olink_displayPlateLayout (@simfor, #98)
Minor Changes
Update CI to Ubuntu 20.04 (@AskPascal, #97)
olink_bridgeselector will now give an error if less than n (number
of) bridge samples can be selected based on set sampleMissingFreq (@marisand, #100)
update return value documentation for all functions to specify
columns and class of output (@kathy-nevola, #102)
replaced or removed cat/print with message/stop so messages printed
to the console can be suppressed (@jrguess, #103)
Bugfixes
fixed spelling mistakes in documentation (@kathy-nevola, #92)
updated DESCRIPTION to fit CRAN specification (@kathy-nevola,
#94)
change T/F to TRUE/FALSE for stability (@AskPascal, #96)
updated documentation to olink_plate_randomizer,
olink_displayPlateDistributions and olink_displayPlateLayout to link
related functions and clarify olink_plate_randomizer documentation
(@simfor, #98)
fixed keywords in documentation (@kathy-nevola, #99)
Olink Analyze 2.0.1
Bug Fixes
Remove hexagon from Readme (@kathy-nevola, #86)
Replace OlinkAnalyze with Olink® Analyze (@kathy-nevola, #86)
Add Ola Caster to author list
Update documentation to change olinkR to Olink Analyze (@jrguess, #89)
Olink Analyze 2.0.0
Major Changes
Package is in the process of being submitted to CRAN
Added ability to prevent OlinkAnalyze from loading fonts and setting
to themes (@OlaCaster, #73)
Decreased the size of npx_data1 and npx_data2 to 2 panels instead of
12 (@kathy-nevola, #76)
Updates to the olink_qc_plot and olink_pca_plot functions (@simfor, #78)
BugFixes
Moved NEWS.md to correct level (@kathy-nevola, #74)
Added cran-comments.md file to document Notes for CRAN submission
(@kathy-nevola,
#74)
Update Vignette to reflect new functionality (@kathy-nevola, #78)
Olink Analyze 1.3.0
Major Changes
DESCRIPTION file updated to include all authors and maintainers
(@kathy-nevola,
#66)
Unit testing was added (@marisand, @simfor, #65, #55, #47)
Continuous Integration (CI) was added (@AskPascal, #57, #53, #40, #31)
read_NPX now converts Panel Names to Sentence case
except Roman Numerals (@kathy-nevola, #44)
Output order of olink_bridgeselector() is now
randomized (@marisand, #60)
PlateSize argument was added to displayPlateLayout()
and olink_plate_randomizer for T48 and T96. Hardcoded sizes
have been removed. (@marisand, #47)
Changed olink_pal() to have gray instead of light blue
(@marisand,
#22)
Bug Fixes
set_plot_theme() will now load Swedish Gothic Thin if
available on all OS (@marisand, @AskPascal, #70, #39)
Help documentation was updated to correct typos and clarify notation
for ANOVA and LME models (@kathy-nevola, @marisand,@AskPascal #67, #33, #37)
Fix olink_dist_plot() from showing multiple bars when
sample has QC warning in some assays (@marisand, @AskPascal, #64)
Fix olink_qc_plot() from showing multiple points/labels
when sample has QC warning in some assays (@marisand, @AskPascal, #63)
Panel names in npx_data1 and npx_data2 were fixed to match new
read_NPX() formatting (@kathy-nevola, #62)
olink_bridgeselector() QC warning filtering changed to
match olink_qc_plot() and olink_dist_plot()
(@marisand, @AskPascal, #61)
global variables are now specified (@kathy-nevola, #45)
Function documentation updated to remove notes on R CMD check (@kathy-nevola,
#39)
Fix summary casting “tukey” to “sidak” adjustment warning in
olink_anova_posthoc() and olink_lmer_posthoc()
functions (@marisand, #38)