GENEAcore 1.2.0

New features

• geneacore() main wrapper is restructured to a 4-part analysis architecture
• geneacore() wrapper optional parameters are passed to the function as a configurable controls list
• Integration of new behavioural bout functions to be run with events outputs only in geneabout()
• Produce daily aggregate activity and sleep measures with option to include participant information
• Function to generate COEL Behavioural Atoms JSON

GENEAcore 1.1.3

New features

• New measurement device ‘GENEActiv 1.3’ added to apply_calibration()
• Non-contiguous files will be read and aggregated as normal with a new last timestamp
• Output folders and MPI files are not created for non-valid GENEActiv bin files

Minor improvements

• Improved handling of invalid inputs: folders without .bin files or single files without the .bin suffix

Bug fixes

• Fixed non-wear detection that was broken in 1.1.0
• Days with only one partial epoch is not returned as an aggregated output
• Date of Birth 1900-01-01 written to MPI as blank field
• MPI output is now saved when a bin file generates only an MPI error
• Non-movement is still calculated when there is a single still event

GENEAcore 1.1.2

New features

• Added overloads for get_UniqueBinFileIdentifier() to enable it to also read a filename or a directory path

GENEAcore 1.1.1

New features

• The StepDiff measure is now included in outputs as default when output_steps = TRUE
• Create a bin file summary from geneacore() by passing parameter summary = TRUE
• geneacore() can now take either a path to a directory of bin files or a path to a single bin file
• MPI file_history now records parameters passed during function calls
• MPI now records the GENEAcore package version used during execution
• A new MPI is created if package version is not listed in the existing MPI
• New DateTimeUTC column has been added to the events and epochs CSV files
• Button press (event marker) timestamps are now recorded in the MPI
• A new MPI is created when a version number does

Minor improvements

• Removed warning message when MPI already exists
• Warning messages added for deprecated functions

Bug fixes

• geneacore() steps error resolved when there are not enough events in the day
• geneacore() events are created when a day has only a single transition (when non-wear spans across multiple days)

GENEAcore 1.1.0

New features

• detect_nonmovement() uses a new sd_threshold value
• detect_transitions() uses new default changepoint penalty values
• apply_all() function applies AGSA, ENMO, UpDown and Degrees measures in a single function
• detect_transitions() runs changepoint only if a different 24-hour cut time is set
• sample_binfile() has new parameter option to allow raw sample RDS to be saved
• detect_transitions() removes short changeover transition between days
• Partial epochs are removed from aggregation output
• Aggregated events and epochs output have added day index column and AGSA.sd and ENMO.sd columns have been removed
• Standardised format of start time and duration for still bouts and non-wear bouts
• Certainty field removed from non-wear bouts
• MPI reports first and last timestamps as integer values

Minor improvements

• sample_binfile() outputs an improved message with time zone offset when reading subset of file

Bug fixes

• detect_transitions() now applies a minimum 5 seconds of data for a valid day
• Event start time and transitions timestamps now match

Breaking changes

• Updated naming conventions for MPI outputs, parameters and functions, see breaking-changes.html

GENEAcore 1.0.1

Released to CRAN