Correction of itemize brackets in roxygen documentation
Correction of link to external packages in roxygen
documentation
Cleaning 4 dashes into 3 dashes when no subsection for inline
documentation
EpiReport 1.0.2 (2021-02-04)
BUG FIXES
CRAN adjustments required
In DESCRIPTION, ‘rmarkdown’ package added to ‘suggests’ section
Correction of AER ECDC reports URL in documentation
EpiReport 1.0.1 (2021-02-04)
BUG FIXES
Allowing NA values in functions
plotBar()
plotBarGrouped()
plotSeasonality()
plotTS()
plotTSGrouped()
EpiReport 1.0.0 (2020-12-18)
BUG FIXES
Fixing the issue of mix between zero reporting and missing reports
in the Trend and Season plots.
NEW FEATURES
New and more recent default dataset: DENGUE2019
Allowing extra stratification for Table 1 on disease stage
(i.e. HEPB and HEPC diseases)
Allowing automatic landscape mode for Table 1 when extra
stratification on acute vs. chronic disease is required
Trend and Season plots are now followed by the list of countries
reporting consistently over the study period and included in the
plot.
Making the function shapeECDCFlexTable() more generic
and adaptable to any kind of table. Adding an option for having the last
row in bold.
EpiReport::MSCode reference table now have an extra
column to allow the article “the” for some country name (e.g. The United
Kingdom, The Netherlands)
Adding the ECDC color palette with the new function
EcdcColors()
NEW FUNCTIONS
In order to allow the user to produce additional outputs in the
report and following the ECDC guidelines for presentation of
surveillance data, additional generic functions are now available:
plotBar(): plot bar graph
plotBarGrouped(): plot grouped bar graph
plotBarH(): plot horizontal bar graph
plotBarGroupedH(): plot grouped horizontal bar
graph
plotPie(): plot pie chart
plotTS(): plot time series
plotTSGrouped(): plot grouped time series
EcdcColors()
body_replace_gg_at_bkm()
BEHAVIORAL CHANGE
Reordering of the outputs in the report.
Renaming the default report name with a shorten name.
Because of the updated version of the officer and
flextable package, existing outputs were not replaced when
the report would be re-run. Each output is now correctly replaced using
new functions from these packages. WARNING: you may have to update your
bookmarks according to these new functions requirements.
MINOR IMPROVEMENTS
Bookmarks names have been simplified.
Cleaning the Template accordingly and dropping bookmarks not
used
Improving error messages (e.g. provide clear error message of the
study period is incomplete).
We now have two numbering: one for Figures and on for Tables.
Numbering of maps in the report is now improved and take into
account multiple maps.
The country “Czech Republic” is now “Czechia” in
EpiReport::MSCode reference table.
Style of outputs caption is improved in the template provided in the
package.
DOCUMENTATION
Vignettes have been updated with the list of bookmarks required in
the Microsoft Word template.
DEPRECATED
The functions plotAgeGender() and
plotAge() are still available in the package but they are
discouraged. Instead, the user is encouraged to use the functions
plotBarGrouped() and plotBar()
respectively.