High-Performance Open-Source Archive
solve_model() — unified ODE dispatcher for SIR, SEIR,
SEIRD, SVEIR, SVEIRD, age-SEIRbuild_pi_spline(), build_pi_step(),
build_pi_exp(), compose_pi() — flexible
intervention functionsbuild_phi_pulse() — smooth Gaussian quarantine
pulsegp_cov_sqexp() — GP covariance builder for Bayesian
pi(t)fit_mle() — maximum likelihood inference with optional
DEoptim global searchfit_smc() — sequential Monte Carlo particle filter for
real-time updatingestimate_Rt_simple() — dependency-free sliding-window
Rt estimatorestimate_Rt() — EpiEstim wrapper with graceful
fallbackbuild_multipatch_SEIR(),
solve_multipatch() — spatial multi-patch modelsgravity_mobility() — gravity-model mobility matrix
builderensemble_forecast() — Bayesian model averaging across
model typesproject_scenarios() — what-if scenario projectionscore_forecast() — CRPS, coverage, and MAE scoringplot_trajectory(), plot_forecast(),
plot_scenarios(), plot_Rt(),
plot_multipatch_snapshot() — publication-ready ggplot2
graphicshubei_covid — built-in Hubei Province COVID-19 dataset
(Jan–Feb 2020)prep_proportions() — convert raw counts to model-ready
proportions0 errors / 0 warnings / 0 notes on R CMD checkURL and BugReports to real GitHub
repository URLsLICENSE and LICENSE.md filesinst/CITATION filecran-comments.md--as-cran
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