Updated to use roxygen2 version 7.3.2 to build the
documentation.
Define ‘R_NO_REMAP’ and ‘STRICT_R_HEADERS’.
EpiContactTrace 0.17.0
(2023-04-02)
IMPROVEMENTS
Register native routines.
Updated to use roxygen2 version 7.2.3 to build the
documentation.
EpiContactTrace 0.16.0
(2021-08-30)
BUG FIXES
Fixed broken examples for InDegree, OutDegree and
IngoingContactChain.
EpiContactTrace 0.15.0
(2020-12-12)
IMPROVEMENTS
NetworkStructure: add a method that works on a list of
ContactTrace objects.
NetworkSummary: add a method that works on a list of ContactTrace
objects.
EpiContactTrace 0.14.0
(2020-09-09)
IMPROVEMENTS
Renamed the NEWS file to NEWS.md and
changed to use markdown format style.
Removed the dependency to the plyr package for building pdf
reports.
Added orcid id:s in the DESCRIPTION file for the package
authors.
Changed the file extension for files in the R folder from ‘.r’ to
‘.R’.
Used roxygen2 ver 7.1.1 to build the documentation.
BUG FIXES
Added the missing table for direct outgoing contacts in the html
report.
EpiContactTrace 0.13.0
(2020-03-15)
IMPROVEMENTS
Set ‘stringsAsFactors = FALSE’ in the data.frame returned by
‘NetworkSummary’.
EpiContactTrace 0.12.0
(2017-10-19)
BUG FIXES
Fix format of authors in CITATION file.
EpiContactTrace 0.11.0
(2017-07-20)
BUG FIXES
Added missing calls to ‘R_forceSymbols’ and ‘R_useDynamicSymbols’ in
the C init function.
EpiContactTrace 0.10.0
(2017-07-20)
IMPROVEMENTS
Added the ‘maxDistance’ argument to the ‘Trace’ method to stop
contact tracing at ‘maxDistance’ (inclusive) from the root node. Default
is ‘NULL’ i.e. to not use the ‘maxDistance’ stop criteria.
EpiContactTrace 0.9.1
(2015-07-03)
BUG FIXES
Fixed build failure on the Solaris platform.
EpiContactTrace 0.9.0
(2015-07-02)
CHANGES
Removed Animate method to pass the CRAN checks. Install version
0.8.8 manually from the archive if that method is required. See section
6.3 in ‘R Installation and Administration’ on how to install packages
from source.
Removed dependencies to plyr, R2HTML and Rcpp.
Removed usage of testthat when testing the package.
Removed list methods for ContactTrace objects. When calculating
measures for several roots, the purpose is to use methods that work
directly on the data.frame with movements.
Updated maintainer email
Changed ‘Title’ field in DESCRIPTION to title case
PERFORMANCE IMPROVEMENTS
Improved performance when calculating ShortestPaths on a data.frame
of movements.
EpiContactTrace 0.8.8
(2013-11-05)
BUG FIXES
Fixed failing test case ‘Duplicate movements’
Fixed NOTE not importing ‘methods’ from R CMD check
EpiContactTrace 0.8.7
NOTE
Changed argument representation to slots in setClass for the two S4
classes ContactTrace and Contacts. The package now requires
R>=3.0.0
EpiContactTrace 0.8.6
(2013-09-01)
NOTE
Plots are not supported in version 0.8.6 since igraph0 has been
archived. We intend to resolve the issue in a future version. Install
version 0.8.5 and igraph0 manually from the archive if plots are
required. See section 6.3 in ‘R Installation and Administration’ on how
to install packages from source.
EpiContactTrace 0.8.5
(2013-07-19)
NEW FEATURES
Updated DESCRIPTION to use Imports instead of Depends for igraph0,
plyr, R2HTML.
EpiContactTrace 0.8.4
NEW FEATURES
Added method ReportObject to be called from a Sweave report template
to get the current ContactTrace object.
EpiContactTrace 0.8.3
NEW FEATURES
inDays and outDays now returned as integer from NetworkSummary of
a ContactTrace object.
Added ‘all’ to interval argument in Animate to view visualize all
movements in one image. The default interval argument was changed to
‘all’.
BUGFIX
Fixed a bug that was introduced in ver 0.7.6 when performing contact
tracing.
EpiContactTrace 0.8.2
BUGFIX
Fixed a bug that was introduced in ver 0.7.6 when calculating
IngoingContactChain and OutgoingContactChain using NetworkSummary.
EpiContactTrace 0.8.0
NEW FEATURES
Using the the animation and ggmap package, contacts can now be
visualized and animated.
EpiContactTrace 0.7.6
PERFORMANCE IMPROVEMENTS
Improved performance when calculating contact chain in C++ code by
counting the number of visited nodes more efficient.
# EpiContactTrace 0.7.5
NEW FEATURES
Report now uses match.arg to check output format.
EpiContactTrace 0.7.4
NEW FEATURES
Added the parameters inBegin, inEnd, outBegin and outEnd to
NetworkSummary to allow for different time windows for ingoing and
outgoing contacts.
EpiContactTrace 0.7.3
BUG FIXES
Fixed bug in Report. InDegree were not defined for the S4 class
Contacts.
EpiContactTrace 0.7.2
NEW FEATURES
Improved performance in C++ code by using visited nodes more
efficient
EpiContactTrace 0.7.1
(2012-11-01)
NEW FEATURES
Updated documentation
BUG FIXES
Fixed bug in C++ code not checking tEnd constraint.
Fixed bug in NetworkSummary when calculating degree.
EpiContactTrace 0.7.0
NEW FEATURES
When the methods Trace, NetworkSummary, InDegree, OutDegree,
IngoingContactChain, OutgoingContactChain are called with the arguments
movements, root, tEnd and days; the measures are calculated for each
combination of root, tEnd and days.
PERFORMANCE IMPROVEMENTS
Ongoing work to improve performance using Rcpp.
EpiContactTrace 0.6.9
(2012-06-21)
NEW FEATURES
Changed from igraph to igraph0 to handle the update of igraph to
0.6.
BUG FIXES
Fixed bug with Report of a list of ContactTrace objects. Each
ContactTrace object called Report with missing parameter clean.
EpiContactTrace 0.6.8
(2012-06-12)
BUG FIXES
The html and pdf reports have been corrected. The table displaying
individual outgoing contacts erronously switched source and
destination.
EpiContactTrace 0.6.7
NEW FEATURES
Removed unused parameters from Report method.
EpiContactTrace 0.6.6
NEW FEATURES
Updated documentation.
EpiContactTrace 0.6.5
NEW FEATURES
Updated documentation.
EpiContactTrace 0.6.4
NEW FEATURES
Updated documentation.
EpiContactTrace 0.6.3
NEW FEATURES
All documentation generated via roxygen.
EpiContactTrace 0.6.2
BUG FIXES
If movements contained duplicate contacts, they were all added. Now
only unique contacts are included from the contact tracing.
EpiContactTrace 0.6.1
BUG FIXES
‘plot’ now works as intended for the S4 ContactTrace object with
only outgoing contacts
EpiContactTrace 0.6.0
NEW FEATURES
Added the method ShortestPaths
NetworkStructure gives the distance from root for each node
during the depth first search.
EpiContactTrace 0.5.3
NEW FEATURES
Added the example dataset transfers
EpiContactTrace 0.5.2
NEW FEATURES
Can now generate an ‘html’ report for the contact tracing using
‘Report’
Can now generate a ‘pdf’ report for the contact tracing using
‘Report’
BUG FIXES
‘show’ now works as intended for the S4 ContactTrace object