Minor adjustments to deal with new version of ggplot2
ENMTools 1.1.3
Bug Fixes
Fixes to background.buffer
ENMTools 1.1.2
Bug Fixes
Fixed clamping issue with identity test
Fixes to raster.standardize
ENMTools 1.1.1
Bug Fixes
Updated Readme file
Fixes to new maxent interface
ENMTools 1.1.0
New features
Updated the entire package to use terra instead of raster
Numerous other bug fixes and behind-the-scenes improvements
ENMTools 1.0.7
Bug Fixes
Fixed issues with background buffer when mask and points didn’t
overlap
Added citation for breadth measurements
ENMTools 1.0.5
Bug Fixes
Permutations for background tests were selecting presences from both
species’ ranges, leading to incorrect values for hypothesis tests.
ENMTools 1.0.4
Bug Fixes
Raes and ter Steege-style tests were returning incorrect evaluate
objects, although plots and p values were correct
test.prop = “block” wasn’t working correctly
Enhancements
Suppressing maxent startup messages by default
Added support for bias layers to modeling functions
Added check.env function to homogenize raster stacks so NAs
propagate across layers
ENMTools 1.0.3
Enhancements
Brought up to date for new spatstat changes
Removed ppmlasso until it is brought back on
CRAN
ENMTools 1.0.2
Enhancements
Added a new general-purpose function for making background layers
from point data. It can do both circular buffers and buffered convex
hulls, and can return points, a polygon, or a raster. Converted the
existing background buffer functions to just call this one, and will
eventually deprecate the single-application functions.
Added ability to select which corner you want for “block”
validation.
Added a function called multi.variogram which takes a
raster stack, builds a variogram for each layer, and then plots the
gamma for each variable as a function of distance, scaled by the maximum
gama for that variable. This allows users to get some idea of the level
of spatial autocorrelation in each predictor variable.
ENMTools 1.0.1
Bug fixes
Minor update to fix an rgdal import that was making CRAN angry
ENMTools 1.0.1
Bug fixes
Minor update to fix an rgdal import that was making CRAN angry
ENMTools 1.0.1
Enhancements
Added variable importance tests via interface with the vip
package
Added clamping for the predict functions, including plots
of where clamping is happening
Added clamping for model construction functions, with a TRUE/FALSE
switch defaulting to TRUE
Changed naming conventions for predict functions so that
the suitability raster is in the $suitability slot, just as with
modeling functions
Added progress bars for a lot of tests
Added “verbose” option for a lot of functions, defaulting to
FALSE
Bug fixes
Fixed interactive.plot generic and moved the function to its own
file to make it easier to extend
Temporarily suppressing some warnings coming out of leaflet
that are being produced by the recent rgdal changes
Fixed background sampling code to resample when necessary
Changed enmtools.ranger demo code to actually use
ranger instead of rf
Fixed code for calculating p values for some of the hypothesis
tests, the old code was getting wrong answers when there were repeated
values