Made all Bioconductor packages optional (suggested)
Added a new, minimal “mini” example object that has no internal
Bioconductor-based features (ie normalization, analysis) to allow for
clean, simple examples that do not depend on suggested packages
Testing updated so that when Bioconductor suggested packages are
unavailable the tests will not be run
v1.1.1
Updated tests and examples so that when suggested packages are
unavailable the examples and/or tests dependent on them are not run
v1.1
made GenomicRanges package optional - used only for exon/gene
levels
added “protein” level data, reviewed/updated isoform data for proper
handling
added imputationMatrix as a type of metadata
reworked reset to resolve issues and remove unneeded code
updated tests and documentation
v1.0.3
significant documentation review/updates
underlying structure - added a few new fields and cleaned up
unneeded methods
updated the example object with additional information
vignette now setup to use the precompiled paradigm