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CRAN: Package CloneSeeker

CloneSeeker: Seeking and Finding Clones in Copy Number and Sequencing Data

Defines the classes and functions used to simulate and to analyze data sets describing copy number variants and, optionally, sequencing mutations in order to detect clonal subsets. See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.

Version: 1.0.16
Depends: R (≥ 3.0)
Imports: methods, graphics, combinat, mc2d, quantmod
Published: 2026-02-10
DOI: 10.32614/CRAN.package.CloneSeeker
Author: Mark Zucker [aut], Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Apache License (== 2.0)
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: CloneSeeker results

Documentation:

Reference manual: CloneSeeker.html , CloneSeeker.pdf
Vignettes: CloneSeeker (source, R code)

Downloads:

Package source: CloneSeeker_1.0.16.tar.gz
Windows binaries: r-devel: CloneSeeker_1.0.16.zip, r-release: CloneSeeker_1.0.16.zip, r-oldrel: CloneSeeker_1.0.16.zip
macOS binaries: r-release (arm64): CloneSeeker_1.0.16.tgz, r-oldrel (arm64): CloneSeeker_1.0.16.tgz, r-release (x86_64): CloneSeeker_1.0.16.tgz, r-oldrel (x86_64): CloneSeeker_1.0.16.tgz
Old sources: CloneSeeker archive

Linking:

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