CLONETv2 Version: 2.2.1

• Set lower bound for corrected CN ratio (this solves issues for homozygous calls in noisy samples).

CLONETv2 Version: 2.2.0

• better support for WGS data. Functions compute_ploidy and compute_dna_admixture have paramter library_type to specify if sequencing data is targeted (WES) or whole genome (WGS).

CLONETv2 Version: 2.1.0

• function compute_beta_table has now optional parameter plot_stats. If plot_stats is set to TRUE, the function prints statistics about the computation of beta table.

CLONETv2 Version: 2.0.0

• Package version of CLONET. Previous versions of CLONET were released as stand-alone tools. Details about older CLONET versions are available at bitbucket.org/deid00/clonet/.