VPSPulse Mirrors
High-Performance Open-Source Archive
NEWS
BioUtils 0.0.1
Initial release
Features
- Load and parse GEO SOFT files (
load.geo.soft)
- Extract expression, phenotype, and gene annotation data
(
extract.expression)
- Perform differential expression analysis using limma
(
run.limma.de)
- Visualize results with PCA and volcano plots
- Conduct single-gene statistical analysis
(
analyze.gene)
- Generate gene-level visualizations
(
gene.analysis.plot)
- Compute gene correlation matrices and heatmaps
- Perform Gene Set Enrichment Analysis (
run.gsea)
- Fit LASSO models for multi-gene biomarker discovery
(
fit.lasso)
Documentation
- Added full pkgdown website
- Added case study vignette on renal cell carcinoma
transcriptomics
BioUtils 0.1.1
Working release
Features
No features were changed
Documentation
- Added an additional vignette to show extensions upon the package
particularly relating to visual analytics