Removed non-standard things in the check directory
Changes in AeRobiology
version 2.0.1
Bug solved in interpollen(method=“tseries”)
CITATION file added with the manuscript information: Rojo, J.,
Picornell, A., Oteros, J. (2019) AeRobiology: the computational tool for
biological data in the air. Methods in Ecology and Evolution. DOI.:
10.1111/2041-210X.13203
Faster functions plot_hour() and plot_heathour(), when the argument
locations = FALSE
Major changes in version 2.0
Two new functions for hourly data processing added:
plot_hour() and plot_heathour().
A new data set about 3-hourly concentrations from an automatic
pollen system (BAA500) have been added:
data(“POMO_pollen”).
Added a tutorial in RPubs:
http://rpubs.com/Picornell/AeRobiology and a
vignette.
Homogenized the name of the functions: ps_plot ->
plot_ps; trend_plot -> analyse_trend; trends -> plot_trend;
qualitycontrol -> quality_control; hour_plot -> plot_hour;
summary_plot -> plot_summary; summary_normplot ->
plot_normsummary
Homogenized the name of the data sets: munich ->
munich_pollen; POMO_pollen
Additional examples added.
Function trend_plot() updated changing the
visualization of the slopes of the trends in end.date and
start.date.
Deleted global assignment (<<-) in all
functions.
Eliminated import of depreciated packages:
reshape2 and plyr. Substituted by active packages
dplyr, tidyr and purr.
export.result and export.plot
arguments have been eliminated in functions when unnecessary
(e.g. interpollen()) and set to FALSE by default in all
functions.
Name of arguments have been homogenized among functions
(e.g. plot -> export.plot)
Plots displayed by default, but not exported.
Eliminated prints of progress messages when
unnecessary (e.g. functions interpollen() and plot_trend()). In some
functions such as calculate_ps(), this functionality is very
relevant.
New argument “result” added to some functions
(e.g. interpollen(), calculate_ps(), plot_hour(), analyse_trend()). This
argument allows the user to decide which result want to be produced by
the function e.g. (result = “table” or result = “plot”).
Input data are always formatted to data.frame (data <-
data.frame(data)).
Fixed bug in function interpollen()
AeRobiology version 1.0
Changes in AeRobiology
version 1.0.3
Import the packages: purrr, colorspace and
httpuv
Function trend_plot() updated with extra information and better
visualization of “significant” argument.
Change the “maintainer” to only one of the authors, maintainer role
will rotate among the authors.
Changes in AeRobiology
version 1.0.2
The changes in specific functions are entitled as
updates.function()
updates.general
Three typos in the documentation (pg. 27, 29, 33, 37).
updates.iplot_abundance()
added a new argument: exclude. exclude is a
character string vector with the names of the pollen types to
be excluded from the plot.
updates.calculate_ps()
Updated documentation with default values of the arguments.
Updated documentation about “natural year”. Natural year is also
known as “Calendar year”, i.e. the period from 1.January to
31.December.