Quality Report Generation for MaxQuant and mzTab Results R package PTXQC version 1.1.5 CRAN Task View: Omics (https://CRAN.R-project.org/view=Omics) Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>. Software Depends: R (>= 3.3.0) Imports: data.table, ggplot2 (>= 3.4), ggdendro, grid, gridExtra, grDevices, gtable, htmlTable, knitr (>= 1.10), magrittr, methods, plyr, R6, R6P, RColorBrewer, reshape2, rmarkdown, rmzqc (>= 0.5.0), seqinr, stats, utils, UpSetR, xml2, yaml Suggests: testthat Chris Bielow <chris.bielow@bsc.fu-berlin.de> Comprehensive R Archive Network (CRAN) Chris Bielow [aut, cre], Juliane Schmachtenberg [ctb], Swenja Wagner [ctb], Patricia Scheil [ctb], Tom Waschischek [ctb], Guido Mastrobuoni [dtc, rev] BSD_3_clause + file LICENSE (https://CRAN.R-project.org/package=PTXQC/LICENSE) 2026-04-23 application/tgz https://CRAN.R-project.org/package=PTXQC doi:10.32614/CRAN.package.PTXQC