Partition-Assisted Clustering and Multiple Alignments of Networks R package PAC version 1.1.6 Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description. Software Imports: Rcpp (>= 0.12.2), igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel LinkingTo: Rcpp Suggests: knitr, rmarkdown Ye Henry Li <hlowl2@gmail.com> Comprehensive R Archive Network (CRAN) Ye Henry Li [aut, cre], Dangna Li [aut] GPL-3 2025-12-15 application/tgz https://CRAN.R-project.org/package=PAC doi:10.32614/CRAN.package.PAC