<?xml version="1.0" encoding="UTF-8"?>
<oai_dc:dc xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:title>Estimating the Optimal Number of Migration Edges from 'Treemix'</dc:title>
  <dc:title>R package OptM version 0.1.9</dc:title>
  <dc:description>The popular population genetic software 'Treemix' by
    'Pickrell and Pritchard' (2012) &lt;DOI:10.1371/journal.pgen.1002967&gt;
    estimates the number of migration edges on a population tree.
    However, it can be difficult to determine the number of migration
    edges to include. Previously, it was customary to stop adding migration
    edges when 99.8% of variation in the data was explained, but 'OptM'
    automates this process using an ad hoc statistic based on the
    second-order rate of change in the log likelihood.  'OptM' also
    has added functionality for various threshold modeling
    to compare with the ad hoc statistic.</dc:description>
  <dc:type>Software</dc:type>
  <dc:relation>Depends: R (&gt;= 3.2.2)</dc:relation>
  <dc:relation>Imports: SiZer (&gt;= 0.1-4), stats, grDevices</dc:relation>
  <dc:creator>Robert Fitak &lt;rfitak9@gmail.com&gt;</dc:creator>
  <dc:publisher>Comprehensive R Archive Network (CRAN)</dc:publisher>
  <dc:contributor>Robert Fitak [aut, cre]</dc:contributor>
  <dc:rights>GPL (&gt;= 2)</dc:rights>
  <dc:date>2025-05-21</dc:date>
  <dc:format>application/tgz</dc:format>
  <dc:identifier>https://CRAN.R-project.org/package=OptM</dc:identifier>
  <dc:identifier>doi:10.32614/CRAN.package.OptM</dc:identifier>
</oai_dc:dc>
