NanoString Quality Control Dashboard R package NACHO version 2.0.6 CRAN Task View: Omics (https://CRAN.R-project.org/view=Omics) NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application. Software Depends: R (>= 3.6.0) Imports: utils, data.table, ggplot2 (>= 3.3.0), ggforce (>= 0.3.1), ggrepel (>= 0.8.1), knitr (>= 1.25), rmarkdown (>= 1.16), shiny (>= 1.4.0), shinyWidgets (>= 0.4.9) Suggests: roxygen2 (>= 7.2.0), testthat (>= 2.2.1), covr (>= 3.3.2), Biobase, GEOquery, limma Mickaël Canouil <pro@mickael.canouil.dev> Comprehensive R Archive Network (CRAN) Mickaël Canouil [aut, cre] (ORCID: <https://orcid.org/0000-0002-3396-4549>), Roderick Slieker [aut] (ORCID: <https://orcid.org/0000-0003-0961-9152>), Gerard Bouland [aut] GPL-3 2024-01-12 application/tgz https://CRAN.R-project.org/package=NACHO doi:10.32614/CRAN.package.NACHO