Miscellaneous Functions for Metabarcoding Analysis R package MiscMetabar version 0.16.8 Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' 'R' packages. It helps to build reproducible and robust bioinformatics pipelines in 'R'. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>. Software Depends: R (>= 4.1.0), phyloseq, ggplot2 (>= 3.5.0), dplyr Imports: ape, Biostrings, cli, dada2, divent, lifecycle, purrr, rlang, stats, XVector Suggests: adespatial, ALDEx2, ANCOMBC, BiocManager, circlize, ComplexUpset, DECIPHER, DESeq2, devtools, DT, edgeR, formattable, ggalluvial, ggfittext, ggh4x, ggnetwork, ggstatsplot, ggridges, ggVennDiagram, glmulti, gtsummary, grDevices, grid, gridExtra, here, httr, igraph, iNEXT, indicspecies, IRanges, jsonlite, knitr, lefser, magrittr, methods, mia, metagenomeSeq, mixtools, multcompView, networkD3, pak, patchwork, pbapply, permute, phangorn, phyloseqGraphTest, pkgnet, plotly, plyr, reshape2, rmarkdown, rotl, Rtsne, scales, seqinr, SRS, stringr, SummarizedExperiment, testthat (>= 3.0.0), tibble, tidyr, treemapify, umap, uwot, vegan, venneuler, vctrs, viridis, withr, spelling Adrien Taudière <adrien.taudiere@zaclys.net> Comprehensive R Archive Network (CRAN) Adrien Taudière [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-1088-1182>) AGPL-3 2026-06-08 application/tgz https://CRAN.R-project.org/package=MiscMetabar doi:10.32614/CRAN.package.MiscMetabar en-US