Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions R package MLML2R version 0.3.3 Maximum likelihood estimates (MLE) of the proportions of 5-mC and 5-hmC in the DNA using information from BS-conversion, TAB-conversion, and oxBS-conversion methods. One can use information from all three methods or any combination of two of them. Estimates are based on Binomial model by Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>. Software Suggests: minfi, microbenchmark, GEOquery, knitr, rmarkdown, IlluminaHumanMethylation450kmanifest Samara Kiihl <samara@ime.unicamp.br> Comprehensive R Archive Network (CRAN) Samara Kiihl [aut, cre], Maria Jose Martinez-Garrido [aut], Arce Domingo-Relloso [aut], Jose Bermudez [aut], Maria Tellez-Plaza [aut] MIT + file LICENSE (https://CRAN.R-project.org/package=MLML2R/LICENSE) 2019-10-17 application/tgz https://CRAN.R-project.org/package=MLML2R doi:10.32614/CRAN.package.MLML2R