Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data R package HaDeX version 1.2.3 CRAN Task View: ChemPhys (https://CRAN.R-project.org/view=ChemPhys) Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (<doi:10.1093/bioinformatics/btaa587>). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app. Software Depends: R (>= 3.0) Imports: data.table, dplyr, ggplot2, latex2exp, reshape2, readr, readxl, shiny, tidyr Suggests: spelling, covr, digest, DT, gridExtra, gsubfn, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, stringr, testthat, vdiffr Weronika Puchala <puchala.weronika@gmail.com> Comprehensive R Archive Network (CRAN) Weronika Puchala [cre, aut] (ORCID: <https://orcid.org/0000-0003-2163-1429>), Michal Burdukiewicz [aut] (ORCID: <https://orcid.org/0000-0001-8926-582X>), Dominik Rafacz [ctb] (ORCID: <https://orcid.org/0000-0003-0925-1909>) GPL-3 2025-07-04 application/tgz https://CRAN.R-project.org/package=HaDeX doi:10.32614/CRAN.package.HaDeX en-US