Three Dimensional High Throughput 'GoMiner' R package HTGM3D version 1.0.3 The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes into hierarchical categories based on biological process (BP), molecular function (MF) and cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R., Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. To capture the benefit of all three ontologies, I developed 'HTGM3D', a three-dimensional version of 'GoMiner'. Software Depends: R (>= 4.2.0) Imports: minimalistGODB, GoMiner, HTGM, HTGM2D, grDevices, stats, R2HTML, rgl, vprint, randomGODB, stringr, salesforcer Suggests: knitr, rmarkdown, testthat (>= 3.0.0) Barry Zeeberg <barryz2013@gmail.com> Comprehensive R Archive Network (CRAN) Barry Zeeberg [aut, cre] GPL (>= 2) 2026-04-26 application/tgz https://CRAN.R-project.org/package=HTGM3D doi:10.32614/CRAN.package.HTGM3D