Non-Negative Matrix Factorization for Single-Cell Omics R package GeneNMF version 0.9.2 A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures. Software Depends: R (>= 4.3.0) Imports: RcppML, Matrix, stats, methods, utils, Seurat (>= 4.3.0), cluster, lsa, irlba, pheatmap, dendextend, viridis, colorspace Suggests: knitr, rmarkdown, fgsea, msigdbr Massimo Andreatta <massimo.andreatta@unige.ch> Comprehensive R Archive Network (CRAN) Massimo Andreatta [aut, cre] (ORCID: <https://orcid.org/0000-0002-8036-2647>), Santiago Carmona [aut] (ORCID: <https://orcid.org/0000-0002-2495-0671>) GPL-3 2025-09-11 application/tgz https://CRAN.R-project.org/package=GeneNMF doi:10.32614/CRAN.package.GeneNMF