Improved q-Values for Discrete Uniform and Homogeneous Tests R package DiscreteQvalue version 1.1 We consider a multiple testing procedure used in many modern applications which is the q-value method proposed by Storey and Tibshirani (2003), <doi:10.1073/pnas.1530509100>. The q-value method is based on the false discovery rate (FDR), hence versions of the q-value method can be defined depending on which estimator of the proportion of true null hypotheses, p0, is plugged in the FDR estimator. We implement the q-value method based on two classical pi0 estimators, and furthermore, we propose and implement three versions of the q-value method for homogeneous discrete uniform P-values based on pi0 estimators which take into account the discrete distribution of the P-values. Software Suggests: coin, exactRankTests Marta Cousido Rocha <martacousido@uvigo.es> Comprehensive R Archive Network (CRAN) Marta Cousido Rocha [aut, cre], José Carlos Soage González [ctr], Jacobo de Uña Álvarez [aut, ths], Sebastian Döhler [aut] GPL-2 2020-04-01 application/tgz https://CRAN.R-project.org/package=DiscreteQvalue doi:10.32614/CRAN.package.DiscreteQvalue