Differential Pattern Analysis via Linear Modeling R package DiPALM version 1.3 CRAN Task View: Omics (https://CRAN.R-project.org/view=Omics) Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>. Software Depends: R (>= 4.1.0) Imports: limma, WGCNA, ggplot2, pwalign, Biostrings, hashr Suggests: edgeR Ryan C. Sartor <sartorry@gmail.com> Comprehensive R Archive Network (CRAN) Ryan C. Sartor [aut, cre], Kathleen Greenham [aut], William Gustafson [aut] GPL (>= 2) 2026-05-29 application/tgz https://CRAN.R-project.org/package=DiPALM doi:10.32614/CRAN.package.DiPALM