<?xml version="1.0" encoding="UTF-8"?>
<oai_dc:dc xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:title>Differentially Expressed Heterogeneous Overdispersion Gene Test
for Count Data</dc:title>
  <dc:title>R package DEHOGT version 0.99.0</dc:title>
  <dc:description>Implements a generalized linear model approach for detecting
    differentially expressed genes across treatment groups in count data. The
    package supports both quasi-Poisson and negative binomial models to handle
    over-dispersion, ensuring robust identification of differential expression.
    It allows for the inclusion of treatment effects and gene-wise covariates, 
    as well as normalization factors for accurate scaling across samples.
    Additionally, it incorporates statistical significance testing with
    options for p-value adjustment and log2 fold range thresholds,
    making it suitable for RNA-seq analysis as described in by 
    Xu et al., (2024) &lt;doi:10.1371/journal.pone.0300565&gt;.</dc:description>
  <dc:type>Software</dc:type>
  <dc:relation>Depends: R (&gt;= 3.5.0)</dc:relation>
  <dc:relation>Imports: doParallel, foreach, MASS,</dc:relation>
  <dc:relation>Suggests: knitr, rmarkdown, BiocStyle</dc:relation>
  <dc:creator>Arlina Shen &lt;ahshen24@berkeley.edu&gt;</dc:creator>
  <dc:publisher>Comprehensive R Archive Network (CRAN)</dc:publisher>
  <dc:contributor>Qi Xu [aut],
  Arlina Shen [cre] (ORCID: &lt;https://orcid.org/0009-0008-5330-6659&gt;),
  Yubai Yuan [ctb],
  Annie Qu [ctb]</dc:contributor>
  <dc:rights>GPL-3</dc:rights>
  <dc:date>2024-09-13</dc:date>
  <dc:format>application/tgz</dc:format>
  <dc:identifier>https://CRAN.R-project.org/package=DEHOGT</dc:identifier>
  <dc:identifier>doi:10.32614/CRAN.package.DEHOGT</dc:identifier>
</oai_dc:dc>
