Distance Based Cell Lineage Reconstruction R package DCLEAR version 1.0.13 R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>. Software Depends: R (>= 4.1.0), tensorflow(>= 2.2.0) Imports: BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, rBayesianOptimization, rlang, BiocGenerics LinkingTo: Rcpp, RcppArmadillo Suggests: knitr, rmarkdown, markdown Il-Youp Kwak <ikwak2@cau.ac.kr> Comprehensive R Archive Network (CRAN) Il-Youp Kwak [aut, cre], Wuming Gong [aut] GPL-3 2023-09-14 application/tgz https://CRAN.R-project.org/package=DCLEAR doi:10.32614/CRAN.package.DCLEAR